Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 2.2e-48 195.3 99 100.0
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 2.3e-37 158.7 99 77.8
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 2.3e-37 158.7 99 77.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 3.0e-37 158.3 99 78.8
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 8.8e-37 156.8 97 77.3
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.2e-36 156.4 95 77.9
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.5e-36 156.0 99 78.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.0e-36 155.6 99 78.8
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 75.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 9.8e-36 153.3 99 74.7
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 9.8e-36 153.3 95 76.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.3e-35 152.9 99 74.7
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.3e-35 152.9 99 72.7
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.3e-35 152.9 99 74.7
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.7e-35 152.5 99 74.7
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 1.7e-35 152.5 99 73.7
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 2.2e-35 152.1 99 72.7
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.2e-35 152.1 99 74.7
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 3.7e-35 151.4 99 72.7
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.7e-35 151.4 99 73.7
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 8.3e-35 150.2 99 72.7
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 8.3e-35 150.2 97 74.2
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.1e-34 149.8 95 75.8
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 70.7
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.8e-34 149.1 98 71.4
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.8e-34 149.1 99 72.7
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 70.7
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 2.4e-34 148.7 93 74.2
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 4.1e-34 147.9 99 71.7
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 4.1e-34 147.9 99 70.7
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 72.7
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 69.7
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 1.2e-33 146.4 99 71.7
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 1.6e-33 146.0 99 70.7
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.6e-33 146.0 99 71.7
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-33 145.6 99 69.7
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-33 145.6 99 69.7
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 2.0e-33 145.6 93 74.2
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 2.7e-33 145.2 99 70.7
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 2.7e-33 145.2 99 68.7
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 3.5e-33 144.8 95 71.6
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 3.5e-33 144.8 99 70.7
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 3.5e-33 144.8 99 71.7
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 3.5e-33 144.8 99 69.7
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 4.5e-33 144.4 99 71.7
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 4.5e-33 144.4 99 68.7
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 7.8e-33 143.7 99 67.7
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.0e-32 143.3 99 67.7
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.0e-32 143.3 99 68.7
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.0e-32 143.3 97 69.1
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 1.0e-32 143.3 99 68.7
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.3e-32 142.1 99 67.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 2.3e-32 142.1 99 67.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 2.3e-32 142.1 99 67.7
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 3.8e-32 141.4 99 67.7
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 3.8e-32 141.4 99 66.7
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 3.8e-32 141.4 99 66.7
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 3.8e-32 141.4 97 67.0
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 65.7
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 67.7
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 66.7
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 5.0e-32 141.0 113 62.8
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.1e-31 139.8 99 66.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 1.1e-31 139.8 99 66.7
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.1e-31 139.8 99 66.7
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 1.1e-31 139.8 99 67.7
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 1.5e-31 139.4 93 69.9
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 1.5e-31 139.4 120 61.7
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 1.9e-31 139.0 99 64.6
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 1.9e-31 139.0 104 65.4
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 2.5e-31 138.7 97 68.0
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 2.5e-31 138.7 88 76.1
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 2.5e-31 138.7 98 71.4
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 3.3e-31 138.3 93 69.9
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 3.3e-31 138.3 97 68.0
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.3e-31 137.9 99 67.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 4.3e-31 137.9 99 65.7
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 5.6e-31 137.5 99 65.7
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.6e-31 137.5 99 65.7
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 5.6e-31 137.5 92 68.5
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 64.6
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 64.6
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 64.6
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 64.6
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 65.7
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.2e-30 136.3 99 63.6
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.1e-30 135.6 99 66.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 2.8e-30 135.2 99 63.6
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 2.8e-30 135.2 99 63.6
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 2.8e-30 135.2 95 67.4
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 3.6e-30 134.8 99 63.6
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 3.6e-30 134.8 91 68.1
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 3.6e-30 134.8 95 67.4
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.7e-30 134.4 99 63.6
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 4.7e-30 134.4 99 63.6
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 4.7e-30 134.4 99 63.6
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 4.7e-30 134.4 99 64.6
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 6.1e-30 134.0 93 67.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 8.0e-30 133.7 94 68.1
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 8.0e-30 133.7 94 66.0
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 62.6
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 62.6
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 63.6
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.4e-29 132.9 95 65.3
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 2.3e-29 132.1 94 64.9
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 1.5e-28 129.4 95 63.2
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 2.0e-28 129.0 94 62.8
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 5.7e-28 127.5 91 68.1
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 9.8e-28 126.7 94 61.7
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 9.8e-28 126.7 99 59.6
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.7e-27 125.9 99 58.6
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 2.2e-27 125.6 99 66.7
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 3.7e-27 124.8 94 60.6
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 3.7e-27 124.8 98 56.1
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 6.4e-27 124.0 102 59.8
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 4.1e-26 121.3 96 58.3
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 7.0e-26 120.6 98 54.1
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.0e-25 119.0 92 59.8
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.0e-24 116.7 98 56.1
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.3e-24 116.3 135 46.7
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 8.6e-24 113.6 146 44.5
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 9.5e-23 110.2 71 71.8
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.6e-22 108.2 70 71.4
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 3.6e-22 108.2 71 70.4
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.0e-22 107.1 103 54.4
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 8.0e-22 107.1 70 70.0
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 1.8e-21 105.9 72 66.7
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.8e-21 105.9 91 54.9
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.0e-20 102.4 91 50.5
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 1.3e-19 99.8 64 71.9
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 3.7e-19 98.2 64 68.8
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 4.9e-19 97.8 64 68.8
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 8.3e-19 97.1 64 70.3
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.4e-18 96.3 81 54.3
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 4.1e-18 94.7 64 67.2
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 3.5e-17 91.7 67 62.7
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 4.6e-17 91.3 87 50.6
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 6.0e-17 90.9 66 63.6
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 7.8e-17 90.5 62 64.5
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 1.7e-16 89.4 64 62.5
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 8.6e-16 87.0 95 52.6
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 8.6e-16 87.0 64 57.8
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.5e-15 86.3 96 42.7
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 7.5e-12 73.9 90 40.0
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 2.9e-11 72.0 61 55.7
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 1.5e-07 59.7 83 36.1


User provided reference genes

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