Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 3.6e-174 614.8 298 100.0
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 6.2e-126 454.5 289 75.1
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.5e-124 449.9 293 71.0
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 2.0e-124 449.5 293 71.0
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 1.7e-123 446.4 294 70.7
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.2e-123 446.0 294 70.7
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 8.4e-123 444.1 294 69.7
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 1.9e-122 443.0 288 71.2
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 7.1e-122 441.0 290 70.3
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 6.0e-121 438.0 285 71.9
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 7.8e-121 437.6 296 68.9
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.0e-120 437.2 288 74.0
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 1.3e-120 436.8 284 73.6
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.7e-120 436.4 287 71.4
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 3.9e-120 435.3 286 71.3
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 5.1e-120 434.9 288 72.6
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 5.1e-120 434.9 292 71.6
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 5.1e-120 434.9 296 69.3
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 2.5e-119 432.6 287 70.7
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 7.3e-119 431.0 290 69.7
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 1.2e-118 430.3 288 69.4
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.2e-118 430.3 294 68.0
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 1.6e-118 429.9 298 67.4
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 2.1e-118 429.5 288 69.8
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 2.8e-118 429.1 288 70.1
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 4.7e-118 428.3 319 63.9
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 4.7e-118 428.3 289 69.6
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 1.1e-117 427.2 289 69.2
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 1.1e-117 427.2 289 72.3
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 1.4e-117 426.8 288 69.8
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 3.1e-117 425.6 286 70.6
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 4.0e-117 425.2 286 71.0
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 4.0e-117 425.2 288 69.4
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 5.2e-117 424.9 296 67.9
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.2e-116 423.7 296 67.9
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 1.2e-116 423.7 289 68.5
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 1.2e-116 423.7 289 69.6
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 1.5e-116 423.3 291 69.4
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 2.0e-116 422.9 296 67.6
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 4.4e-116 421.8 287 69.0
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 7.6e-116 421.0 288 69.1
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 9.9e-116 420.6 287 67.6
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.7e-115 419.9 295 67.8
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 2.9e-115 419.1 286 70.6
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 6.4e-115 417.9 288 67.0
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 1.9e-114 416.4 295 68.1
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 2.4e-114 416.0 284 70.8
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 5.4e-114 414.8 297 68.7
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 1.6e-113 413.3 291 68.4
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.6e-113 413.3 289 68.9
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 3.5e-113 412.1 291 68.4
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 7.8e-113 411.0 291 67.7
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.3e-112 410.2 286 67.8
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 6.6e-112 407.9 298 65.1
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 6.6e-112 407.9 310 65.5
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 7.3e-111 404.4 277 70.0
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.3e-110 403.7 289 66.1
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 3.6e-110 402.1 300 65.7
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 3.6e-110 402.1 295 65.4
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 4.8e-110 401.7 283 66.4
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.8e-109 399.8 289 64.4
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 4.0e-109 398.7 283 66.4
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.5e-108 396.7 289 64.7
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 4.4e-108 395.2 288 63.9
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 4.4e-108 395.2 288 64.6
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 5.8e-108 394.8 295 64.7
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 5.8e-108 394.8 309 63.8
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.4e-106 390.2 292 65.8
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 2.4e-106 389.4 297 65.0
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 3.2e-106 389.0 294 62.9
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 4.2e-106 388.7 340 58.8
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 4.2e-106 388.7 286 64.7
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 1.3e-104 383.6 299 63.5
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 1.7e-104 383.3 285 63.5
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 2.3e-104 382.9 285 63.5
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 2.3e-104 382.9 286 61.9
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 3.0e-104 382.5 285 63.5
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 3.0e-104 382.5 285 63.5
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 3.0e-104 382.5 292 64.7
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 6.6e-104 381.3 285 63.5
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 8.7e-104 380.9 288 63.2
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.5e-103 379.4 294 63.3
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 2.5e-103 379.4 296 66.2
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 5.6e-103 378.3 289 61.9
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 1.8e-101 373.2 287 60.6
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 8.4e-99 364.4 362 51.1
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 4.6e-97 358.6 227 74.0
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 3.4e-92 342.4 297 57.6
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 5.8e-92 341.7 289 60.2
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 5.8e-92 341.7 288 58.0
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 1.4e-90 337.0 288 57.3
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 2.7e-89 332.8 227 70.0
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 2.3e-88 329.7 282 55.3
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.3e-87 325.5 256 63.7
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 4.3e-87 325.5 278 56.8
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.8e-86 322.0 280 58.6
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 5.0e-83 312.0 280 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 8.4e-83 311.2 282 54.6
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.1e-82 310.8 215 67.9
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 4.6e-81 305.4 443 43.8
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 1.8e-77 293.5 263 59.3
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.7e-70 269.2 288 50.3
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.8e-69 266.9 289 49.1
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 1.3e-67 260.8 348 40.8
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 4.4e-63 245.7 180 62.8
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.1e-61 241.1 185 63.2
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 5.5e-58 228.8 160 66.9
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.8e-53 213.8 173 58.4
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 5.3e-53 212.2 199 55.8
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 1.3e-38 164.5 110 67.3
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 6.3e-38 162.2 107 71.0
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.2e-33 147.9 143 55.9
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 6.4e-30 135.6 208 40.4
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 7.8e-28 128.6 262 30.5
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 9.5e-26 121.7 434 23.0
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 4.6e-20 102.8 68 69.1
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 3.6e-17 93.2 67 70.1
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 3.4e-15 86.7 69 58.0
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.5e-10 71.2 53 66.0
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 2.6e-07 60.5 41 63.4


User provided reference genes

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