Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1540.8 820 100.0
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1158.3 823 75.3
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1157.1 822 74.6
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1152.9 822 74.8
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1150.2 818 75.4
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1150.2 819 74.7
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1149.4 819 75.1
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1146.3 822 74.3
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1135.2 790 77.1
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1128.6 822 72.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1127.9 823 72.9
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1122.8 819 73.5
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1120.5 823 73.6
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1118.6 822 72.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1116.7 821 72.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1112.4 824 72.9
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1110.9 846 71.7
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1109.0 821 71.3
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1107.4 859 70.1
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1106.7 822 72.5
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1101.7 827 72.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1098.6 823 70.8
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1096.6 820 70.7
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1096.3 817 70.4
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1095.5 820 70.7
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1095.1 820 70.9
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1094.0 820 72.1
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1092.4 821 70.8
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1091.3 826 70.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1090.9 826 70.2
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1086.6 826 70.3
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 821 70.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.1e-311 1072.8 818 71.6
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.7e-311 1072.4 847 69.7
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.0e-311 1070.8 833 69.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 2.1e-309 1065.4 821 69.3
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.0e-308 1063.1 831 69.9
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 3.4e-307 1058.1 824 68.6
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.7e-307 1057.4 829 68.4
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 5.4e-305 1050.8 822 68.6
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.6e-304 1049.3 818 69.4
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 5.9e-304 1047.3 825 69.5
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 4.3e-302 1041.2 787 71.0
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.3e-302 1041.2 817 69.4
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.6e-301 1039.3 822 68.5
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.2e-299 1033.1 752 71.9
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.5e-299 1032.7 846 66.8
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 3.4e-299 1031.6 823 67.9
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 3.4e-299 1031.6 820 67.9
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 816 68.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 9.2e-297 1023.5 759 73.1
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 822 66.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 822 66.5
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 3.9e-295 1018.1 828 67.3
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.5e-294 1016.1 822 66.4
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 4.3e-294 1014.6 823 67.2
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 9.5e-294 1013.4 822 67.2
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.2e-293 1013.1 822 65.9
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.0e-292 1010.0 891 63.2
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.2e-291 1006.5 818 66.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 2.6e-291 1005.4 822 66.2
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 7.5e-291 1003.8 819 66.5
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.3e-290 1003.0 821 66.0
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 9.2e-289 996.9 819 64.7
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 7.8e-288 993.8 821 65.7
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 2.3e-287 992.3 819 65.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 6.6e-287 990.7 819 64.8
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.1e-286 989.9 818 65.4
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.2e-285 986.5 818 65.0
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 3.6e-285 984.9 816 65.9
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 4.7e-285 984.6 816 66.1
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 8.1e-285 983.8 819 64.3
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.8e-284 982.6 818 64.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.8e-284 982.6 821 65.7
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.0e-283 979.2 819 64.3
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 9.8e-283 976.9 819 64.6
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 9.8e-283 976.9 819 64.5
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.1e-281 973.4 752 68.4
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.9e-281 972.6 817 64.1
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.5e-280 968.4 822 64.1
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.5e-278 963.0 825 64.4
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.6e-277 959.5 835 63.0
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 5.2e-276 954.5 826 64.0
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.9e-274 948.7 927 58.1
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 2.1e-272 942.6 862 61.0
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 8.6e-271 937.2 834 62.4
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 7.6e-267 924.1 860 60.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 3.0e-255 885.6 819 58.4
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 3.7e-253 878.6 821 59.7
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 4.8e-253 878.2 824 57.9
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 8.4e-250 867.5 819 59.3
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.8e-239 833.2 675 67.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.1e-236 822.4 871 54.1
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.6e-224 781.9 607 69.9
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.3e-223 779.6 826 56.2
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.7e-219 764.6 665 62.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.8e-175 620.5 831 45.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 2.3e-175 620.2 778 46.9
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 9.2e-172 608.2 623 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.1e-169 601.3 766 46.1
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.9e-153 547.4 491 62.5
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.8e-151 540.8 542 57.0
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.6e-147 526.2 401 68.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.7e-146 524.2 861 38.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 5.1e-146 522.7 324 82.4
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 5.4e-140 502.7 784 39.8
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.4e-140 502.7 405 66.7
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.1e-139 500.7 832 38.8
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.2e-116 423.7 271 79.3
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.8e-109 400.2 489 52.1
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.6e-102 377.5 255 74.1
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.6e-99 367.1 275 65.1
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.9e-86 323.2 314 56.4
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.5e-78 297.0 244 68.9
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.1e-60 239.2 812 26.5
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.5e-52 211.5 356 40.7
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.6e-49 201.4 162 66.0
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.4e-47 195.7 827 23.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 3.8e-40 171.0 227 48.5
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 7.1e-39 166.8 125 68.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.5e-36 159.1 119 66.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.4e-34 152.5 96 78.1
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-31 142.1 221 43.0
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.1e-28 132.9 96 67.7
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.9e-28 132.1 111 61.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.7e-24 119.0 70 78.6
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.7e-24 119.0 70 78.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.8e-24 117.9 70 88.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 4.2e-23 114.4 72 77.8
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.1e-21 107.5 126 53.2
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 5.5e-15 87.4 89 59.6
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 7.1e-15 87.0 61 73.8
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 3.9e-13 81.3 157 42.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 2.1e-11 75.5 68 63.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.9e-08 65.1 47 63.8
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-06 58.2 70 55.7


User provided reference genes

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