Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 4.1e-147 524.6 254 100.0
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 1.9e-120 436.0 253 79.8
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 1.3e-119 433.3 253 79.1
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 9.0e-118 427.2 253 77.1
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 3.8e-116 421.8 253 76.3
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 3.2e-115 418.7 246 76.4
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 4.6e-114 414.8 252 75.8
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 6.0e-114 414.5 251 76.1
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 6.0e-114 414.5 246 77.6
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 2.3e-113 412.5 244 75.0
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 2.3e-113 412.5 248 76.6
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 8.7e-113 410.6 251 73.7
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 3.3e-112 408.7 254 74.4
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 3.3e-112 408.7 246 75.2
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 4.3e-112 408.3 246 75.6
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 4.3e-112 408.3 246 74.8
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 5.7e-112 407.9 286 68.9
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 1.6e-111 406.4 236 76.7
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 1.6e-111 406.4 251 74.1
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.8e-111 404.8 254 74.0
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 1.1e-110 403.7 237 76.8
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 3.1e-110 402.1 266 69.9
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 4.1e-110 401.7 244 75.0
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 5.3e-110 401.4 251 72.9
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 2.2e-108 396.0 253 71.1
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 9.3e-107 390.6 238 74.4
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.5e-106 388.7 279 65.6
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 1.1e-104 383.6 253 68.8
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.9e-104 382.9 251 68.5
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.9e-104 382.9 251 68.5
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 1.9e-104 382.9 251 68.5
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.3e-103 380.2 251 68.1
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 1.3e-103 380.2 258 67.1
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 3.7e-103 378.6 241 71.0
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.8e-103 378.3 267 66.3
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 2.4e-102 375.9 236 70.3
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 3.1e-102 375.6 243 67.5
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.0e-101 372.9 253 68.4
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 5.9e-101 371.3 328 57.3
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.6e-98 363.2 244 67.2
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 5.1e-97 358.2 218 73.9
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 1.5e-96 356.7 254 66.5
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 8.2e-95 350.9 280 58.9
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 1.3e-92 343.6 201 78.1
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 2.9e-92 342.4 249 65.9
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 1.9e-91 339.7 252 64.7
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 7.4e-88 327.8 242 63.6
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 1.3e-84 317.0 206 72.8
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 5.0e-84 315.1 215 67.0
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 1.2e-82 310.5 180 75.6
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 1.0e-81 307.4 234 63.2
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 2.3e-81 306.2 246 61.4
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 4.4e-80 302.0 184 74.5
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 7.5e-80 301.2 247 59.1
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 2.2e-79 299.7 247 61.9
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 2.8e-79 299.3 244 54.9
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.3e-76 290.4 213 67.6
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 1.7e-76 290.0 244 55.3
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 3.2e-75 285.8 188 69.1
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.4e-70 269.6 253 50.6
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 5.9e-69 265.0 159 74.2
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 2.9e-68 262.7 154 77.3
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 8.0e-66 254.6 160 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.5e-64 250.4 240 51.2
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.3e-63 247.3 244 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 3.7e-63 245.7 244 48.8
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.4e-62 243.8 244 47.5
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.8e-62 243.4 240 48.8
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.5e-61 239.2 240 47.5
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 5.9e-61 238.4 240 46.7
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 2.9e-55 219.5 228 50.0
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 7.8e-53 211.5 126 74.6
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 8.0e-50 201.4 243 38.3
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 5.8e-48 195.3 228 39.5
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 5.8e-48 195.3 228 39.5
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.9e-47 193.0 228 39.0
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 1.2e-45 187.6 143 60.1
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 2.1e-37 160.2 94 79.8
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 2.7e-37 159.8 87 85.1
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 4.3e-35 152.5 93 72.0
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 9.9e-32 141.4 88 72.7
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.5e-29 132.9 87 72.4
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.5e-29 132.9 87 72.4
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 5.1e-28 129.0 74 77.0
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 8.4e-23 111.7 114 51.8
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 5.4e-22 109.0 93 52.7
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.6e-16 90.1 56 76.8
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.8e-09 67.4 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 5.8e-08 62.4 51 49.0


User provided reference genes

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