Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 0.0e+00 1323.1 679 100.0
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 9.4e-271 936.8 685 70.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.4e-266 922.9 673 70.6
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.4e-266 922.9 669 69.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.6e-265 918.7 705 68.5
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 9.4e-263 910.2 672 69.5
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 3.6e-262 908.3 693 67.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.8e-261 906.0 685 67.7
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.8e-261 906.0 708 67.2
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.1e-261 904.4 682 68.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 3.7e-259 898.3 685 66.7
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 4.5e-257 891.3 679 67.9
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 5.9e-257 891.0 677 68.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 5.0e-256 887.9 729 63.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 9.4e-255 883.6 684 67.4
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.6e-254 882.9 685 67.4
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 3.6e-254 881.7 677 67.4
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.8e-253 879.4 678 66.7
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 5.2e-253 877.9 677 67.1
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 7.4e-252 874.0 683 66.9
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.7e-251 872.8 679 67.2
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.1e-250 870.2 717 63.9
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 2.2e-248 862.4 681 67.4
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.5e-247 857.8 722 62.5
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.2e-246 856.7 631 68.9
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.0e-244 849.4 685 65.7
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 6.3e-243 844.3 682 64.5
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 9.1e-242 840.5 671 67.2
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 6.5e-240 834.3 686 62.0
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.2e-239 832.0 680 64.7
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.6e-238 829.7 680 64.6
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.6e-238 829.7 673 65.5
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.7e-238 828.9 680 64.6
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 8.8e-237 823.9 682 63.8
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.2e-235 819.3 688 63.4
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.1e-234 817.0 667 63.6
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 2.9e-232 808.9 672 64.3
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 6.6e-232 807.7 685 62.2
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.5e-231 805.8 655 63.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.6e-230 802.0 667 62.5
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 4.7e-230 801.6 669 62.8
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.0e-229 800.4 676 62.3
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.2e-229 798.1 676 60.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 5.2e-229 798.1 671 62.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.2e-229 798.1 688 62.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 6.8e-229 797.7 671 62.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 8.9e-229 797.3 685 60.9
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 8.9e-229 797.3 674 62.6
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.0e-228 796.2 597 69.5
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.4e-228 795.4 674 62.2
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.3e-227 793.5 682 61.1
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.8e-227 792.3 664 62.0
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.5e-225 785.4 675 61.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 6.6e-224 781.2 672 62.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 8.6e-224 780.8 683 61.8
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.2e-222 776.9 667 62.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.4e-221 773.5 680 58.7
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 4.0e-221 771.9 672 61.9
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.9e-219 765.8 672 61.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 6.4e-219 764.6 618 63.4
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 6.4e-219 764.6 673 60.5
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.2e-218 762.3 676 59.6
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.9e-216 755.4 676 59.6
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 3.7e-211 738.8 598 64.4
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.2e-209 733.8 673 57.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 6.6e-208 728.0 598 64.0
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.9e-207 726.5 676 56.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.9e-207 726.5 483 74.5
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.5e-207 726.1 673 56.6
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 4.3e-207 725.3 679 56.8
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 9.5e-207 724.2 677 59.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.3e-205 719.5 679 56.1
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.4e-204 715.7 670 56.3
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 5.8e-204 714.9 673 55.7
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.7e-203 713.4 670 56.1
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.9e-202 709.9 677 57.9
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.7e-200 703.4 677 55.7
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 3.9e-200 702.2 673 55.0
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 8.1e-198 694.5 602 60.6
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 5.2e-197 691.8 671 56.9
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.3e-195 687.2 655 55.6
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.2e-195 686.4 665 56.2
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.4e-194 681.8 671 55.9
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.5e-193 679.1 663 54.0
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.8e-190 669.5 624 58.8
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.1e-189 666.0 670 55.1
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 9.3e-186 654.4 615 57.4
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 8.4e-179 631.3 678 52.4
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 4.6e-177 625.5 702 50.4
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.8e-176 623.6 671 51.0
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 6.7e-176 621.7 686 50.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.1e-167 594.3 649 51.6
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 6.1e-161 572.0 655 51.3
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 7.7e-156 555.1 605 50.4
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.8e-152 543.9 613 51.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.5e-140 504.2 709 44.0
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.9e-132 475.7 299 73.6
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 3.1e-125 453.4 475 51.2
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 5.9e-124 449.1 707 42.4
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 9.8e-119 431.8 276 74.6
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 3.4e-111 406.8 354 57.3
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 4.2e-69 266.9 218 60.6
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.5e-63 248.4 312 50.3
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-47 194.1 103 87.4
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-46 191.8 105 84.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.3e-43 181.4 105 80.0
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.0e-43 181.0 101 82.2
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.2e-33 148.3 102 69.6
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 6.3e-33 146.7 421 31.4
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.4e-32 144.8 85 80.0
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.4e-19 102.4 202 40.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 3.7e-17 94.4 334 25.7
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-11 75.9 62 54.8
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.7e-09 67.8 42 71.4
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.4e-08 65.1 50 56.0
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.1e-08 64.3 182 28.6


User provided reference genes

Program Settings