Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 2.6e-158 562.0 282 100.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 8.3e-64 248.1 286 53.5
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 3.5e-62 242.7 289 50.9
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.1e-58 231.1 270 49.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 8.9e-58 228.0 259 51.7
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 5.8e-57 225.3 278 50.7
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.4e-55 220.7 295 48.8
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.4e-55 219.9 248 51.6
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 5.4e-55 218.8 239 53.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 6.0e-54 215.3 256 49.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 2.3e-53 213.4 241 50.6
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.6e-51 207.2 254 46.9
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 4.7e-51 205.7 266 49.2
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.7e-51 205.7 283 45.2
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 8.1e-51 204.9 273 44.7
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.4e-50 204.1 234 48.7
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 6.8e-50 201.8 232 49.1
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 6.8e-50 201.8 275 44.7
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 2.0e-49 200.3 240 51.7
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.3e-48 197.6 244 47.1
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 6.4e-48 195.3 287 48.1
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 1.1e-47 194.5 284 44.7
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 2.1e-46 190.3 123 80.5
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 3.5e-46 189.5 235 48.1
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 3.5e-46 189.5 241 46.9
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 5.6e-44 182.2 238 45.4
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.6e-43 180.6 284 43.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.1e-42 177.9 265 44.5
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 5.4e-39 165.6 231 45.5
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 9.3e-39 164.9 334 34.1
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.6e-38 162.5 230 43.0
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 4.6e-38 162.5 234 43.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.0e-38 162.2 244 43.4
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.0e-37 161.4 250 44.4
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.5e-36 156.8 249 40.2
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 7.3e-36 155.2 265 40.0
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 9.6e-36 154.8 265 40.0
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 2.8e-35 153.3 228 43.9
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.3e-34 149.1 149 52.3
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.3e-34 149.1 149 52.3
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.2e-33 147.9 199 46.2
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.5e-33 147.5 248 40.7
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 6.4e-32 142.1 251 38.2
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 4.2e-31 139.4 187 46.5
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.3e-29 134.4 120 52.5
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.9e-28 130.6 203 43.3
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 1.2e-25 121.3 98 64.3
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.7e-24 117.5 77 67.5
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 5.5e-23 112.5 112 48.2
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 1.1e-18 98.2 256 32.8
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.7e-16 90.9 101 51.5
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 8.4e-16 88.6 69 58.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.3e-12 76.3 107 38.3
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.3e-12 76.3 106 37.7
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.1e-11 73.9 82 46.3
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.1e-11 73.9 95 37.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.7e-11 73.2 250 27.6
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 8.2e-11 72.0 122 34.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 8.2e-11 72.0 165 32.1
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.1e-10 71.6 94 38.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.1e-10 71.6 95 36.8
Thecc.09G258600 Theobroma cacao HOM05D008415 ORTHO05D010601 1.1e-10 71.6 187 32.1
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.8e-10 70.9 94 42.6
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.4e-10 70.5 94 39.4
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.4e-10 70.5 94 39.4
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.1e-10 70.1 87 43.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 5.3e-10 69.3 94 38.3
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 6.9e-10 68.9 82 39.0
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 6.9e-10 68.9 123 36.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 6.9e-10 68.9 94 35.1
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 9.0e-10 68.6 118 33.1
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.0e-10 68.6 115 36.5
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 9.0e-10 68.6 132 31.8
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 9.0e-10 68.6 114 36.0
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.2e-09 68.2 82 39.0
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.2e-09 68.2 94 39.4
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.5e-09 67.8 95 38.9
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.5e-09 67.8 116 37.1
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.5e-09 67.8 77 41.6
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.5e-09 67.8 109 39.4
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.5e-09 67.8 101 38.6
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.6e-09 67.0 95 37.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.6e-09 67.0 137 30.7
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-09 67.0 117 35.0
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 2.6e-09 67.0 125 33.6
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.4e-09 66.6 92 40.2
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 3.4e-09 66.6 95 35.8
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 3.4e-09 66.6 210 27.6
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.5e-09 66.2 69 46.4
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.5e-09 66.2 183 28.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 4.5e-09 66.2 95 35.8
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.5e-09 66.2 87 39.1
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 5.9e-09 65.9 113 36.3
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.9e-09 65.9 211 27.0
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.9e-09 65.9 95 33.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 5.9e-09 65.9 166 33.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 7.6e-09 65.5 125 33.6
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.6e-09 65.5 82 39.0
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 7.6e-09 65.5 84 41.7
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.0e-08 65.1 203 28.6
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.3e-08 64.7 69 44.9
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.3e-08 64.7 142 35.2
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.3e-08 64.7 82 40.2
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.7e-08 64.3 164 28.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.7e-08 64.3 109 38.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.7e-08 64.3 213 26.3
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.7e-08 64.3 126 34.1
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.7e-08 64.3 77 44.2
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.7e-08 64.3 86 39.5
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 2.2e-08 63.9 72 43.1
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 2.2e-08 63.9 70 44.3
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.9e-08 63.5 95 36.8
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.9e-08 63.5 91 37.4
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.8e-08 63.2 85 40.0
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 3.8e-08 63.2 97 37.1
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.8e-08 63.2 123 31.7
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.0e-08 62.8 95 36.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.0e-08 62.8 179 26.8
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 5.0e-08 62.8 179 25.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 5.0e-08 62.8 87 41.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.5e-08 62.4 106 35.8
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 6.5e-08 62.4 123 31.7
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 6.5e-08 62.4 80 38.8
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 8.4e-08 62.0 101 36.6
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 8.4e-08 62.0 80 38.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-07 61.6 104 34.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.1e-07 61.6 57 47.4
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.1e-07 61.6 191 29.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.4e-07 61.2 200 29.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.4e-07 61.2 83 39.8
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.9e-07 60.8 142 30.3
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.9e-07 60.8 114 33.3
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.5e-07 60.5 198 25.3
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.5e-07 60.5 119 31.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.5e-07 60.5 78 39.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.2e-07 60.1 82 36.6
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.2e-07 60.1 224 28.6
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.2e-07 59.7 133 30.8
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 5.5e-07 59.3 168 28.0
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 5.5e-07 59.3 95 34.7
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 5.5e-07 59.3 131 30.5
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 7.2e-07 58.9 126 28.6
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 7.2e-07 58.9 69 42.0
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.2e-07 58.9 131 29.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 9.3e-07 58.5 213 26.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 9.3e-07 58.5 195 25.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 9.3e-07 58.5 69 44.9
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.2e-06 58.2 112 33.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.2e-06 58.2 133 30.8
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.6e-06 57.8 167 29.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.6e-06 57.8 98 39.8
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 2.1e-06 57.4 96 30.2
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.1e-06 57.4 83 39.8
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.1e-06 57.4 149 29.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 2.7e-06 57.0 230 27.0
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.7e-06 57.0 95 35.8
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.5e-06 56.6 212 22.2
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 3.5e-06 56.6 69 40.6
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 4.6e-06 56.2 209 24.4
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 4.6e-06 56.2 209 24.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.6e-06 56.2 243 30.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 6.1e-06 55.8 244 27.0
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.1e-06 55.8 199 24.6
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 6.1e-06 55.8 183 29.5
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 6.1e-06 55.8 163 28.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 7.9e-06 55.5 270 23.0


User provided reference genes

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