Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 4.0e-76 288.9 267 100.0
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.7e-29 134.0 98 63.3
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 6.3e-29 132.1 100 58.0
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 4.1e-28 129.4 89 69.7
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 5.3e-28 129.0 99 60.6
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 5.3e-28 129.0 88 67.0
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 7.0e-28 128.6 99 59.6
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 2.0e-27 127.1 97 60.8
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 4.5e-27 125.9 97 59.8
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 2.9e-26 123.2 99 55.6
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 5.0e-26 122.5 101 56.4
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 1.5e-25 120.9 98 57.1
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 7.2e-25 118.6 94 59.6
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 2.1e-24 117.1 89 59.6
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 2.1e-24 117.1 91 53.8
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.7e-24 116.7 91 60.4
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 2.7e-24 116.7 99 52.5
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 8.0e-24 115.2 128 49.2
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 2.3e-23 113.6 97 52.6
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 6.7e-23 112.1 90 53.3
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 8.8e-23 111.7 97 51.5
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 1.5e-22 110.9 96 50.0
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.5e-22 110.9 88 53.4
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 1.5e-22 110.9 99 54.5
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.5e-22 110.9 90 52.2
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 1.5e-22 110.9 95 52.6
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 1.5e-22 110.9 97 51.5
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 2.6e-22 110.2 88 54.5
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 2.6e-22 110.2 95 57.9
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 2.6e-22 110.2 97 56.7
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 4.4e-22 109.4 88 53.4
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 4.4e-22 109.4 99 50.5
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 4.4e-22 109.4 99 52.5
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 5.7e-22 109.0 88 53.4
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 7.5e-22 108.6 92 55.4
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 7.5e-22 108.6 99 55.6
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 9.7e-22 108.2 101 54.5
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 1.3e-21 107.8 97 49.5
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 1.7e-21 107.5 99 47.5
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 2.2e-21 107.1 99 54.5
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 2.2e-21 107.1 99 50.5
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 8.2e-21 105.1 101 52.5
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 8.2e-21 105.1 92 53.3
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 1.1e-20 104.8 95 47.4
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 1.8e-20 104.0 97 51.5
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 2.4e-20 103.6 98 45.9
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.4e-20 103.6 98 45.9
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 3.1e-20 103.2 88 54.5
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 3.1e-20 103.2 134 39.6
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.3e-20 102.4 98 45.9
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 7.0e-20 102.1 100 51.0
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 9.1e-20 101.7 90 52.2
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 1.2e-19 101.3 97 46.4
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.7e-19 100.1 98 43.9
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 2.7e-19 100.1 90 52.2
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 3.5e-19 99.8 100 50.0
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 4.5e-19 99.4 86 53.5
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 1.0e-18 98.2 90 52.2
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 1.3e-18 97.8 63 74.6
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 1.7e-18 97.4 77 57.1
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 2.2e-18 97.1 74 62.2
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 5.0e-18 95.9 99 44.4
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 5.0e-18 95.9 95 45.3
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 5.0e-18 95.9 141 39.7
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 5.0e-18 95.9 88 53.4
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 6.5e-18 95.5 95 46.3
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 6.5e-18 95.5 95 46.3
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 6.5e-18 95.5 100 45.0
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 8.5e-18 95.1 94 46.8
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 1.1e-17 94.7 95 45.3
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 1.1e-17 94.7 99 44.4
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 1.1e-17 94.7 95 45.3
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 1.1e-17 94.7 74 59.5
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 1.5e-17 94.4 95 44.2
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 1.5e-17 94.4 95 44.2
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.9e-17 94.0 90 48.9
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 1.9e-17 94.0 154 36.4
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 1.9e-17 94.0 93 53.8
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 4.2e-17 92.8 95 45.3
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 4.2e-17 92.8 96 46.9
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 4.2e-17 92.8 96 46.9
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 4.2e-17 92.8 96 46.9
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 4.2e-17 92.8 95 46.3
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 7.2e-17 92.0 90 46.7
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.7e-16 90.1 95 42.1
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 2.7e-16 90.1 86 50.0
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.6e-16 89.7 95 43.2
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 6.1e-16 89.0 120 39.2
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 1.0e-15 88.2 95 41.1
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 1.0e-15 88.2 95 41.1
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.2e-14 84.7 97 44.3
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 7.5e-14 82.0 101 46.5
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 9.8e-14 81.6 153 34.0
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 1.7e-13 80.9 77 48.1
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 1.1e-12 78.2 70 48.6
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 5.4e-12 75.9 68 52.9
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 4.5e-11 72.8 68 47.1
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 5.0e-10 69.3 59 45.8
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 8.5e-10 68.6 88 36.4
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 2.5e-09 67.0 88 43.2
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 4.2e-09 66.2 57 56.1
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.0e-07 61.6 78 38.5
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 2.3e-07 60.5 71 38.0
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 8.8e-07 58.5 95 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 1.2e-06 58.2 87 28.7
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 4.4e-06 56.2 79 36.7


User provided reference genes

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