Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 9.4e-92 340.1 165 100.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 9.0e-10 67.8 131 41.2
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-08 63.9 121 38.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.3e-08 63.9 108 38.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.7e-08 63.5 110 39.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-08 63.2 122 37.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.9e-08 62.0 108 38.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 4.9e-08 62.0 107 39.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 6.5e-08 61.6 100 40.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 8.4e-08 61.2 109 38.5
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-07 60.8 108 38.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.4e-07 60.5 109 35.8
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-07 60.5 108 38.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.9e-07 60.1 120 37.5
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.9e-07 60.1 109 41.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.9e-07 60.1 109 37.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.9e-07 60.1 108 39.8
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.5e-07 59.7 110 34.5
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.5e-07 59.7 109 40.4
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.5e-07 59.7 109 37.6
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-07 59.7 110 38.2
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-07 59.7 109 37.6
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.2e-07 59.3 101 36.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.2e-07 59.3 109 42.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 3.2e-07 59.3 109 39.4
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.2e-07 59.3 106 38.7
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.2e-07 59.3 109 38.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.2e-07 59.3 107 35.5
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.2e-07 59.3 109 36.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.2e-07 59.3 109 37.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.2e-07 58.9 110 40.0
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.2e-07 58.9 106 38.7
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.2e-07 58.9 110 40.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.2e-07 58.9 110 40.9
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.2e-07 58.9 114 42.1
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.2e-07 58.9 102 38.2
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.2e-07 58.9 109 36.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 4.2e-07 58.9 106 36.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 5.5e-07 58.5 109 40.4
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.5e-07 58.5 109 40.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.5e-07 58.5 108 38.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 7.1e-07 58.2 106 36.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 7.1e-07 58.2 107 39.3
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 7.1e-07 58.2 122 35.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 9.3e-07 57.8 109 38.5
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 9.3e-07 57.8 108 36.1
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 9.3e-07 57.8 108 36.1
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 9.3e-07 57.8 109 40.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.3e-07 57.8 109 37.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 9.3e-07 57.8 100 36.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-06 57.4 96 42.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.2e-06 57.4 103 37.9
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-06 57.4 121 35.5
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.2e-06 57.4 121 35.5
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.2e-06 57.4 108 37.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.2e-06 57.4 100 36.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.2e-06 57.4 100 36.0
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.2e-06 57.4 100 40.0
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.2e-06 57.4 110 37.3
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.6e-06 57.0 109 37.6
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.6e-06 57.0 118 33.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.6e-06 57.0 93 41.9
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.6e-06 57.0 109 35.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.1e-06 56.6 91 41.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.1e-06 56.6 107 34.6
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.1e-06 56.6 128 32.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.1e-06 56.6 104 37.5
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.1e-06 56.6 113 34.5
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.1e-06 56.6 109 40.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.1e-06 56.6 112 39.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.7e-06 56.2 121 35.5
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.7e-06 56.2 109 37.6
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.7e-06 56.2 107 36.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.7e-06 56.2 134 34.3
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.7e-06 56.2 97 44.3
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.7e-06 56.2 119 35.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.5e-06 55.8 92 40.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 3.5e-06 55.8 92 42.4
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 3.5e-06 55.8 107 38.3
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 3.5e-06 55.8 105 40.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.5e-06 55.8 117 33.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.5e-06 55.8 115 35.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.6e-06 55.5 102 38.2
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 4.6e-06 55.5 119 34.5
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 4.6e-06 55.5 107 35.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 4.6e-06 55.5 107 35.5
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 4.6e-06 55.5 92 40.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.6e-06 55.5 119 36.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.0e-06 55.1 98 41.8
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.9e-06 54.7 116 33.6


User provided reference genes

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