Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.8e-290 1001.9 504 100.0
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.5e-188 662.5 504 65.7
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 9.0e-186 654.1 493 66.1
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.9e-184 649.0 493 65.5
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 4.6e-182 641.7 493 64.9
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 3.9e-181 638.6 493 64.7
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.1e-181 638.3 495 65.7
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.3e-179 633.6 502 64.1
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.4e-177 625.5 504 63.1
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 2.9e-176 622.5 506 64.2
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.6e-174 616.7 509 62.1
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.0e-173 612.5 504 61.9
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.5e-172 610.1 480 64.8
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.4e-170 603.6 495 62.8
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.4e-170 603.6 497 62.0
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 6.9e-170 601.3 502 60.8
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 7.6e-169 597.8 495 62.2
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 7.6e-169 597.8 472 62.9
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.0e-168 597.4 504 61.5
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.2e-168 596.3 499 62.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 5.0e-168 595.1 497 61.2
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.9e-167 593.2 496 61.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 3.2e-167 592.4 509 60.1
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 3.2e-167 592.4 500 61.0
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.2e-167 592.0 500 61.2
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 7.2e-167 591.3 500 61.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 7.2e-167 591.3 500 61.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.2e-166 590.5 499 60.9
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.1e-166 589.7 504 60.5
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.1e-166 589.7 493 62.1
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.8e-165 586.6 504 60.7
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 2.3e-165 586.3 505 60.4
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 5.1e-165 585.1 439 65.6
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 6.7e-165 584.7 497 63.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.9e-164 583.2 497 61.6
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.3e-164 582.4 497 60.0
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 4.1e-162 575.5 478 61.9
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 6.9e-162 574.7 600 50.8
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.0e-161 573.2 472 62.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 2.0e-161 573.2 494 60.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 3.4e-161 572.4 495 59.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.5e-161 572.0 498 60.6
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.3e-160 570.5 509 60.3
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.3e-160 570.5 498 60.6
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.9e-160 569.3 505 59.2
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 3.8e-160 568.9 520 58.5
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-159 567.4 489 59.3
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.9e-159 566.6 495 59.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.5e-159 566.2 497 60.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.2e-158 563.9 495 58.4
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 5.1e-157 558.5 480 59.4
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.1e-156 557.4 491 57.2
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.0e-156 556.6 506 59.5
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 2.6e-156 556.2 479 59.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.7e-155 553.5 504 59.5
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.8e-155 552.7 502 59.0
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 8.2e-155 551.2 495 58.4
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.1e-154 550.8 498 58.6
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.4e-154 549.7 489 58.1
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.4e-154 549.7 497 57.7
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 3.4e-153 545.8 442 61.8
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.5e-153 545.4 498 58.4
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.0e-152 544.3 492 58.1
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.7e-152 543.5 494 57.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 5.0e-152 542.0 491 57.2
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 7.2e-151 538.1 494 58.7
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.0e-149 534.3 480 58.3
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.4e-149 533.9 438 61.6
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 8.8e-149 531.2 444 60.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.2e-147 526.6 434 60.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 3.7e-147 525.8 454 59.7
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 6.3e-147 525.0 492 54.9
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 9.1e-146 521.2 444 59.7
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 5.9e-145 518.5 505 54.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 5.9e-145 518.5 505 54.7
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.3e-144 517.3 446 61.0
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 2.9e-144 516.2 522 54.8
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 6.5e-144 515.0 497 54.1
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.5e-143 513.8 514 54.5
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 7.2e-143 511.5 488 55.3
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 4.7e-142 508.8 511 54.6
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 4.7e-142 508.8 503 53.7
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.0e-141 507.7 507 53.6
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.3e-141 506.5 497 54.1
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.0e-141 506.1 506 53.2
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 6.7e-141 505.0 496 55.4
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-140 503.8 506 53.6
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-140 503.8 495 54.5
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.0e-140 503.4 446 58.7
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 7.5e-140 501.5 502 53.4
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-139 500.7 424 61.1
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 2.2e-139 500.0 507 53.1
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-138 497.7 447 57.3
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-138 497.7 495 54.1
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.6e-137 493.8 508 52.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 7.7e-137 491.5 446 59.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 7.7e-137 491.5 450 56.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.0e-136 491.1 442 57.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-136 490.7 513 53.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.7e-136 490.3 511 52.3
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.2e-135 485.7 507 52.1
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 5.5e-135 485.3 510 53.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.2e-134 484.2 513 53.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.2e-134 484.2 456 56.8
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.3e-131 474.2 440 56.6
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.1e-130 469.2 450 55.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 7.0e-130 468.4 430 56.3
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.6e-129 467.2 499 52.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 5.9e-129 465.3 509 50.5
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 2.8e-126 456.4 512 50.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 6.1e-126 455.3 488 51.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 6.8e-125 451.8 394 58.6
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.1e-122 444.5 506 49.8
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 7.8e-121 438.3 398 58.5
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 8.6e-120 434.9 384 60.7
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.9e-119 433.7 488 50.4
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.7e-118 429.1 416 55.5
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 6.4e-115 418.7 313 62.3
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.3e-112 411.0 432 53.5
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.6e-110 402.9 336 61.3
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.4e-106 391.0 487 47.0
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.7e-105 386.7 464 49.4
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 6.0e-105 385.6 309 61.5
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 7.1e-98 362.1 456 45.4
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.4e-93 347.1 368 52.7
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 7.6e-92 342.0 305 57.0
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 3.8e-91 339.7 487 41.3
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.2e-89 334.7 475 41.7
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.5e-84 317.8 205 73.2
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 7.6e-76 288.9 299 50.5
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.4e-74 283.9 323 45.2
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 6.0e-73 279.3 223 57.8
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.3e-70 271.6 192 68.8
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 9.9e-68 261.9 235 62.1
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.2e-67 260.8 288 50.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.4e-66 257.3 469 35.0
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.5e-50 204.1 132 72.0
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-49 200.3 190 56.3
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.2e-41 175.3 280 36.8
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.9e-40 170.2 412 29.9
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 7.2e-34 149.4 123 61.0
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 8.2e-30 136.0 203 39.4
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-26 125.2 88 63.6
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.2e-26 124.0 81 67.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.8e-24 118.2 84 64.3
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 5.0e-19 100.1 125 48.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-15 88.6 66 60.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.0e-15 88.2 65 61.5
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 9.8e-15 85.9 65 60.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.2e-14 84.7 156 38.5
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.6e-12 78.6 57 68.4
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 4.2e-10 70.5 184 28.3
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 7.2e-10 69.7 43 67.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 9.8e-07 59.3 67 46.3
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 3.7e-06 57.4 101 36.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 8.3e-06 56.2 100 36.0


User provided reference genes

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