Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10790 Coffea canephora HOM05D003292 ORTHO05D004237 2.0e-83 312.4 160 100.0
Nn2g11538 Nelumbo nucifera HOM05D003292 ORTHO05D004237 2.5e-41 172.6 170 58.8
Gohir.A05G295200 Gossypium hirsutum HOM05D003292 ORTHO05D004237 4.7e-40 168.3 170 55.9
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 6.2e-40 167.9 170 56.5
Dinv32702 Davidia involucrata HOM05D003292 ORTHO05D004237 6.2e-40 167.9 170 57.6
Gorai.009G312500 Gossypium raimondii HOM05D003292 ORTHO05D004237 8.1e-40 167.5 170 55.9
Thecc.10G078500 Theobroma cacao HOM05D003292 ORTHO05D004237 8.1e-40 167.5 170 55.9
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea HOM05D003292 ORTHO05D004237 1.1e-39 167.2 170 56.5
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea HOM05D003292 ORTHO05D004237 1.1e-39 167.2 170 56.5
Glyma.10G209300 Glycine max HOM05D003292 ORTHO05D004237 1.1e-39 167.2 170 55.9
ClCG05G021130 Citrullus lanatus HOM05D003292 ORTHO05D004237 1.4e-39 166.8 170 55.9
Nitab4.5_0007148g0070 Nicotiana tabacum HOM05D003292 ORTHO05D004237 1.4e-39 166.8 171 55.6
SGA_v2.0_scaffold180G39620 Striga asiatica HOM05D003292 ORTHO05D004237 1.4e-39 166.8 170 57.1
VMungo0720G0781 Vigna mungo HOM05D003292 ORTHO05D004237 1.4e-39 166.8 170 56.5
Migut.D02251 Erythranthe guttata HOM05D003292 ORTHO05D004237 1.8e-39 166.4 170 56.5
Glyma.20G181300 Glycine max HOM05D003292 ORTHO05D004237 1.8e-39 166.4 170 55.3
Gohir.D05G295900 Gossypium hirsutum HOM05D003292 ORTHO05D004237 3.1e-39 165.6 170 55.3
MELO3C012414.2 Cucumis melo HOM05D003292 ORTHO05D004237 4.0e-39 165.2 170 55.3
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla HOM05D003292 ORTHO05D004237 4.0e-39 165.2 168 56.0
Aqoxy1G01184 Aquilegia oxysepala HOM05D003292 ORTHO05D004237 5.3e-39 164.9 170 54.1
MSTRG.27476 Avicennia marina HOM05D003292 ORTHO05D004237 5.3e-39 164.9 170 53.5
Medtr1g094680 Medicago truncatula HOM05D003292 ORTHO05D004237 5.3e-39 164.9 170 55.9
Nitab4.5_0004479g0080 Nicotiana tabacum HOM05D003292 ORTHO05D004237 5.3e-39 164.9 171 55.6
TWI38G0463 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 5.3e-39 164.9 170 54.7
Lj5g0020782 Lotus japonicus HOM05D003292 ORTHO05D004237 6.9e-39 164.5 170 55.9
Manes.07G096900 Manihot esculenta HOM05D003292 ORTHO05D004237 6.9e-39 164.5 170 55.9
ATR0680G328 Amborella trichopoda HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 57.1
CsaV3_5G036130 Cucumis sativus L. HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 55.3
MBI18_g21586_MAGBIO Magnolia biondii HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 54.7
Phvul.007G096800 Phaseolus vulgaris HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 55.3
Rhsim02G0095100 Rhododendron simsii HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 55.9
Rhsim09G0149700 Rhododendron simsii HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 55.9
TAR633G2338 Trochodendron aralioides HOM05D003292 ORTHO05D004237 9.0e-39 164.1 170 55.3
Duzib128G0335 Durio zibethinus HOM05D003292 ORTHO05D004237 1.2e-38 163.7 170 55.3
vmacro04854 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 1.2e-38 163.7 170 55.3
Ca_10553_v3 Cicer arietinum L. HOM05D003292 ORTHO05D004237 1.5e-38 163.3 168 56.0
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.5e-38 163.3 170 54.7
Atru.chr12.818 Acer truncatum HOM05D003292 ORTHO05D004237 2.0e-38 162.9 170 54.7
CSS0026599 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 2.0e-38 162.9 173 56.1
Carub.0003s0953 Capsella rubella HOM05D003292 ORTHO05D004237 2.0e-38 162.9 170 54.1
Gohir.D10G212500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.6e-38 162.5 170 56.5
Peaxi162Scf00115g01224 Petunia axillaris HOM05D003292 ORTHO05D004237 2.6e-38 162.5 171 53.8
Sed0016709 Sechium edule HOM05D003292 ORTHO05D004237 2.6e-38 162.5 170 54.1
Aa31LG3G2920 Aethionema arabicum HOM05D003292 ORTHO05D004237 3.4e-38 162.2 184 52.7
AL3G21680 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 3.4e-38 162.2 170 54.1
CiPaw.02G172900 Carya illinoinensis HOM05D003292 ORTHO05D004237 3.4e-38 162.2 170 56.5
GSVIVG01025229001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.4e-38 162.2 170 55.3
Actinidia06753 Actinidia chinensis HOM05D003292 ORTHO05D004237 4.4e-38 161.8 170 55.3
CSS0026427 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 5.8e-38 161.4 173 55.5
Cc02_g11130 Coffea canephora HOM05D003292 ORTHO05D004237 5.8e-38 161.4 171 53.8
Eucgr.G02857 Eucalyptus grandis HOM05D003292 ORTHO05D004237 5.8e-38 161.4 174 54.0
Peaxi162Scf00431g00110 Petunia axillaris HOM05D003292 ORTHO05D004237 5.8e-38 161.4 171 56.1
BcaC09g48102 Brassica carinata HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 53.5
A01p41910 Brassica napus HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 53.5
BolC1t05407H Brassica oleracea HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 53.5
BraA01t04260Z Brassica rapa HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 53.5
CSS0003969 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 56.5
CANSAT56G2535 Cannabis sativa HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 54.1
Gorai.011G238300 Gossypium raimondii HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 55.9
Lalb_Chr06g0170371 Lupinus albus HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 54.7
TPR.G1911 Trifolium pratense HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 54.7
HPP92_013048 Vanilla planifolia HOM05D003292 ORTHO05D004237 7.6e-38 161.0 170 54.1
PGR142G1202 Punica granatum HOM05D003292 ORTHO05D004237 9.9e-38 160.6 174 54.0
Sc06g0001710 Simmondsia chinensis HOM05D003292 ORTHO05D004237 9.9e-38 160.6 171 53.2
unitig_46.g18600 Utricularia gibba HOM05D003292 ORTHO05D004237 9.9e-38 160.6 170 54.1
CDE06G2226 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.3e-37 160.2 170 54.7
Thhalv10020822m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 1.3e-37 160.2 170 52.4
QL08p055153 Quercus lobata HOM05D003292 ORTHO05D004237 1.3e-37 160.2 169 53.8
BcaB04g21216 Brassica carinata HOM05D003292 ORTHO05D004237 1.7e-37 159.8 170 52.9
BcaB04g21217 Brassica carinata HOM05D003292 ORTHO05D004237 1.7e-37 159.8 170 52.9
CSS0007603 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.7e-37 159.8 170 54.1
HanXRQChr14g0452611 Helianthus annuus HOM05D003292 ORTHO05D004237 1.7e-37 159.8 172 54.1
Sp3g08620 Schrenkiella parvula HOM05D003292 ORTHO05D004237 1.7e-37 159.8 170 53.5
THA.LOC104823204 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 1.7e-37 159.8 170 53.5
Actinidia24123 Actinidia chinensis HOM05D003292 ORTHO05D004237 2.2e-37 159.5 173 54.3
AT3G10350 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 2.2e-37 159.5 170 53.5
CAN.G1358.5 Capsicum annuum HOM05D003292 ORTHO05D004237 2.2e-37 159.5 171 54.4
CAN.G476.2 Capsicum annuum HOM05D003292 ORTHO05D004237 2.2e-37 159.5 171 55.0
BcaC05g29475 Brassica carinata HOM05D003292 ORTHO05D004237 2.9e-37 159.1 170 52.9
A05p38800 Brassica napus HOM05D003292 ORTHO05D004237 2.9e-37 159.1 170 52.9
BolC5t34438H Brassica oleracea HOM05D003292 ORTHO05D004237 2.9e-37 159.1 174 52.3
BraA05t22671Z Brassica rapa HOM05D003292 ORTHO05D004237 2.9e-37 159.1 174 52.3
PSO063G0716 Papaver somniferum HOM05D003292 ORTHO05D004237 2.9e-37 159.1 173 53.8
PSO339G5193 Papaver somniferum HOM05D003292 ORTHO05D004237 2.9e-37 159.1 173 53.8
DCAR_006075 Daucus carota HOM05D003292 ORTHO05D004237 4.9e-37 158.3 175 53.7
HanXRQChr14g0456221 Helianthus annuus HOM05D003292 ORTHO05D004237 8.4e-37 157.5 170 53.5
Nitab4.5_0002194g0030 Nicotiana tabacum HOM05D003292 ORTHO05D004237 8.4e-37 157.5 167 56.3
Sabra08G0025000 Salix brachista HOM05D003292 ORTHO05D004237 8.4e-37 157.5 174 51.7
Eucgr.J00904 Eucalyptus grandis HOM05D003292 ORTHO05D004237 1.1e-36 157.1 170 51.2
Lsat_1_v5_gn_2_99761 Lactuca sativa HOM05D003292 ORTHO05D004237 1.1e-36 157.1 169 53.3
MD01G1105500 Malus domestica HOM05D003292 ORTHO05D004237 1.4e-36 156.8 170 53.5
Ciclev10028528m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.9e-36 156.4 171 54.4
CiPaw.01G270600 Carya illinoinensis HOM05D003292 ORTHO05D004237 2.4e-36 156.0 170 54.7
Migut.D01651 Erythranthe guttata HOM05D003292 ORTHO05D004237 2.4e-36 156.0 170 51.8
Migut.F01967 Erythranthe guttata HOM05D003292 ORTHO05D004237 2.4e-36 156.0 170 51.8
Atru.chr3.3588 Acer truncatum HOM05D003292 ORTHO05D004237 3.2e-36 155.6 170 54.1
COL.COLO4_38472 Corchorus olitorius HOM05D003292 ORTHO05D004237 3.2e-36 155.6 161 55.9
TWI79G1368 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 3.2e-36 155.6 170 52.4
Potri.008G037100 Populus trichocarpa HOM05D003292 ORTHO05D004237 4.2e-36 155.2 174 50.0
ECA238G4082 Erigeron canadensis HOM05D003292 ORTHO05D004237 5.4e-36 154.8 170 52.9
Prupe.2G211000 Prunus persica HOM05D003292 ORTHO05D004237 7.1e-36 154.5 170 52.4
EL10Ac6g14147 Beta vulgaris HOM05D003292 ORTHO05D004237 9.3e-36 154.1 174 50.6
Duzib168G0106 Durio zibethinus HOM05D003292 ORTHO05D004237 9.3e-36 154.1 168 51.8
Sopen11g028450 Solanum pennellii HOM05D003292 ORTHO05D004237 9.3e-36 154.1 171 52.6
Lj2A17G38 Lonicera japonica HOM05D003292 ORTHO05D004237 1.2e-35 153.7 170 52.4
Potri.010G225100 Populus trichocarpa HOM05D003292 ORTHO05D004237 1.6e-35 153.3 174 49.4
Oeu056299.2 Olea europaea HOM05D003292 ORTHO05D004237 2.1e-35 152.9 172 51.2
Solyc11g069830.2 Solanum lycopersicum HOM05D003292 ORTHO05D004237 2.1e-35 152.9 171 52.6
vmacro03221 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 2.1e-35 152.9 173 53.2
FvH4_7g18990 Fragaria vesca HOM05D003292 ORTHO05D004237 2.7e-35 152.5 170 51.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.7e-35 152.5 170 51.8
FAN06G1207 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.7e-35 152.5 170 51.8
FAN10G0369 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.7e-35 152.5 170 51.8
Os02g0745000 Oryza sativa ssp. japonica HOM05D003292 ORTHO05D004237 2.7e-35 152.5 170 50.6
RcHm_v2.0_Chr1g0362921 Rosa chinensis HOM05D003292 ORTHO05D004237 3.5e-35 152.1 170 51.8
C05p57830 Brassica napus HOM05D003292 ORTHO05D004237 4.6e-35 151.8 174 50.6
ECA238G1658 Erigeron canadensis HOM05D003292 ORTHO05D004237 4.6e-35 151.8 174 50.0
MD07G1171700 Malus domestica HOM05D003292 ORTHO05D004237 4.6e-35 151.8 170 52.4
THA.LOC104799512 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 4.6e-35 151.8 169 52.7
COL.COLO4_18292 Corchorus olitorius HOM05D003292 ORTHO05D004237 6.0e-35 151.4 170 51.8
FAN06G4609 Fragaria x ananassa HOM05D003292 ORTHO05D004237 6.0e-35 151.4 170 51.8
Nitab4.5_0004126g0040 Nicotiana tabacum HOM05D003292 ORTHO05D004237 6.0e-35 151.4 167 54.5
PGSC0003DMG400008075 Solanum tuberosum HOM05D003292 ORTHO05D004237 6.0e-35 151.4 171 51.5
FAN03G0674 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.0e-34 150.6 170 51.2
AUR62043812 Chenopodium quinoa HOM05D003292 ORTHO05D004237 1.3e-34 150.2 174 49.4
Sabra10G0174000 Salix brachista HOM05D003292 ORTHO05D004237 1.3e-34 150.2 174 48.3
Mapoly0037s0120 Marchantia polymorpha HOM05D003292 ORTHO05D004237 1.7e-34 149.8 170 50.0
Pp3c22_13860 Physcomitrium patens HOM05D003292 ORTHO05D004237 1.7e-34 149.8 170 51.2
PGR119G0151 Punica granatum HOM05D003292 ORTHO05D004237 3.9e-34 148.7 170 48.8
Gorai.009G109800 Gossypium raimondii HOM05D003292 ORTHO05D004237 5.1e-34 148.3 170 49.4
Pp3c19_12470 Physcomitrium patens HOM05D003292 ORTHO05D004237 8.7e-34 147.5 170 50.6
Gohir.D05G105800 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.1e-33 147.1 170 48.8
Gohir.A05G105750 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.5e-33 146.7 170 48.8
Actinidia22439 Actinidia chinensis HOM05D003292 ORTHO05D004237 2.5e-33 146.0 160 54.4
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 3.3e-33 145.6 163 50.3
Manes.07G095828 Manihot esculenta HOM05D003292 ORTHO05D004237 3.6e-32 142.1 109 67.0
SMO143G0002 Selaginella moellendorffii HOM05D003292 ORTHO05D004237 3.6e-32 142.1 170 48.8
Aa31LG1G12690 Aethionema arabicum HOM05D003292 ORTHO05D004237 8.1e-32 141.0 169 49.1
Lj3g0021738 Lotus japonicus HOM05D003292 ORTHO05D004237 1.1e-31 140.6 170 49.4
Manes.07G095808 Manihot esculenta HOM05D003292 ORTHO05D004237 3.1e-31 139.0 109 66.1
arahy.Tifrunner.gnm1.ann1.B3ZHWF Arachis hypogaea HOM05D003292 ORTHO05D004237 9.0e-31 137.5 169 49.7
AL8G37320 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 1.2e-30 137.1 170 48.2
arahy.Tifrunner.gnm1.ann1.869HPH Arachis hypogaea HOM05D003292 ORTHO05D004237 1.2e-30 137.1 169 49.1
Sp6g22310 Schrenkiella parvula HOM05D003292 ORTHO05D004237 2.0e-30 136.3 170 47.6
AT5G60730 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 2.6e-30 136.0 170 47.6
BcaC03g13941 Brassica carinata HOM05D003292 ORTHO05D004237 4.5e-30 135.2 171 47.4
BolC2t07224H Brassica oleracea HOM05D003292 ORTHO05D004237 4.5e-30 135.2 171 47.4
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus HOM05D003292 ORTHO05D004237 7.6e-30 134.4 171 46.8
Carub.0008s2141 Capsella rubella HOM05D003292 ORTHO05D004237 9.9e-30 134.0 170 48.2
C02p11500 Brassica napus HOM05D003292 ORTHO05D004237 1.3e-29 133.7 171 47.4
Thhalv10013776m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 1.7e-29 133.3 170 47.6
Gohir.A10G204500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.7e-29 133.3 157 53.5
CARHR274410 Cardamine hirsuta HOM05D003292 ORTHO05D004237 2.2e-29 132.9 173 47.4
Psat7g144400 Pisum sativum HOM05D003292 ORTHO05D004237 2.2e-29 132.9 170 45.9
Lalb_Chr01g0004461 Lupinus albus HOM05D003292 ORTHO05D004237 2.9e-29 132.5 168 48.8
CBR_g19921 Chara braunii HOM05D003292 ORTHO05D004237 4.9e-29 131.7 171 43.9
TPR.G6163 Trifolium pratense HOM05D003292 ORTHO05D004237 1.1e-28 130.6 170 47.6
Cpa.g.sc53.98 Carica papaya HOM05D003292 ORTHO05D004237 2.4e-28 129.4 119 58.8
Nitab4.5_0004797g0010 Nicotiana tabacum HOM05D003292 ORTHO05D004237 4.2e-28 128.6 105 63.8
BcaB05g22666 Brassica carinata HOM05D003292 ORTHO05D004237 3.5e-27 125.6 165 47.9
Haze_16867 Corylus avellana HOM05D003292 ORTHO05D004237 1.0e-26 124.0 145 54.5
Medtr4g058005 Medicago truncatula HOM05D003292 ORTHO05D004237 1.0e-26 124.0 170 45.3
Cpa.g.sc65.13 Carica papaya HOM05D003292 ORTHO05D004237 6.7e-26 121.3 171 46.8
Lsat_1_v5_gn_2_103060 Lactuca sativa HOM05D003292 ORTHO05D004237 1.9e-25 119.8 142 51.4
Rhsim13G0097900 Rhododendron simsii HOM05D003292 ORTHO05D004237 3.3e-25 119.0 141 54.6
CDE02G4294 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.3e-24 117.1 101 61.4
Thecc.10G077400 Theobroma cacao HOM05D003292 ORTHO05D037436 1.3e-24 117.1 100 60.0
DCAR_006429 Daucus carota HOM05D003292 ORTHO05D004237 6.9e-23 111.3 170 40.6
Solyc04g025160.3 Solanum lycopersicum HOM05D003292 ORTHO05D004237 2.0e-22 109.8 115 56.5
Sopen04g011550 Solanum pennellii HOM05D003292 ORTHO05D004237 2.0e-22 109.8 115 56.5
Zm00001eb080780 Zea mays HOM05D003292 ORTHO05D004237 2.6e-22 109.4 133 42.1
Atru.chr4.431 Acer truncatum HOM05D003292 ORTHO05D004237 1.3e-21 107.1 105 58.1
MCO10G054 Micromonas commoda HOM05D003292 ORTHO05D004237 2.2e-21 106.3 169 39.1
Manes.04G017100 Manihot esculenta HOM05D003292 ORTHO05D004237 4.9e-21 105.1 117 53.0
Thecc.10G078000 Theobroma cacao HOM05D003292 ORTHO05D410035 2.5e-20 102.8 99 55.6
Cre05.g245158 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 1.3e-18 97.1 175 35.4
Dinv31213 Davidia involucrata HOM05D003292 ORTHO05D004237 3.0e-18 95.9 103 57.3
Cre24.g755097 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 1.3e-16 90.5 169 34.3
Oeu007406.1 Olea europaea HOM05D003292 ORTHO05D004237 3.7e-16 89.0 116 42.2
PRCOL_00003341 Prasinoderma coloniale HOM05D003292 ORTHO05D004237 1.8e-15 86.7 201 31.8
Solyc04g025120.2 Solanum lycopersicum HOM05D003292 ORTHO05D037436 1.6e-08 63.5 51 54.9
Sopen04g011540 Solanum pennellii HOM05D000006 ORTHO05D000001 6.3e-08 61.6 47 57.4
C04p45130 Brassica napus HOM05D003292 ORTHO05D033686 5.3e-07 58.5 112 41.1
BcaC09g50541 Brassica carinata HOM05D003292 ORTHO05D016764 9.0e-07 57.8 116 41.4


User provided reference genes

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