Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 1.0e-69 266.5 129 100.0
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 7.7e-49 197.2 128 75.8
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 2.2e-48 195.7 123 78.0
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.1e-47 193.4 126 69.8
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.1e-47 193.4 124 73.4
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.5e-47 193.0 124 73.4
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.5e-47 192.2 123 75.6
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.2e-46 189.9 123 74.0
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 1.6e-46 189.5 123 74.0
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.7e-46 188.0 123 73.2
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 6.1e-46 187.6 125 71.2
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 6.1e-46 187.6 123 73.2
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.4e-45 186.4 112 80.4
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.8e-45 186.0 123 71.5
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.3e-45 185.7 116 75.9
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.3e-45 185.7 124 69.4
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 2.3e-45 185.7 124 69.4
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.0e-45 184.9 127 70.1
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 2.0e-44 182.6 112 77.7
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 2.0e-44 182.6 112 76.8
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.6e-44 182.2 112 76.8
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.6e-44 182.2 112 76.8
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.6e-44 182.2 119 71.4
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.3e-44 181.8 121 71.9
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 3.3e-44 181.8 113 76.1
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 3.3e-44 181.8 109 79.8
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 5.7e-44 181.0 113 77.0
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 7.5e-44 180.6 121 70.2
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 9.7e-44 180.3 119 68.9
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.3e-43 179.9 120 72.5
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.7e-43 179.5 119 68.9
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 2.2e-43 179.1 112 73.2
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.2e-43 179.1 119 68.9
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.2e-43 179.1 112 74.1
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 3.7e-43 178.3 121 71.1
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.7e-43 178.3 125 66.4
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.7e-43 178.3 125 66.4
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 4.8e-43 177.9 112 74.1
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.8e-43 177.9 112 74.1
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 4.8e-43 177.9 124 71.0
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 4.8e-43 177.9 121 66.9
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 6.3e-43 177.6 113 74.3
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 6.3e-43 177.6 120 69.2
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 8.2e-43 177.2 121 70.2
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 8.2e-43 177.2 120 69.2
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 8.2e-43 177.2 125 66.4
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.1e-42 176.8 120 68.3
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.4e-42 176.4 120 69.2
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.8e-42 176.0 113 71.7
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 2.4e-42 175.6 112 73.2
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 3.1e-42 175.3 99 84.8
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 3.1e-42 175.3 120 70.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.1e-42 175.3 120 70.0
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.1e-42 175.3 114 71.1
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 4.1e-42 174.9 112 73.2
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 4.1e-42 174.9 121 67.8
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 5.3e-42 174.5 112 73.2
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 5.3e-42 174.5 113 71.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 7.0e-42 174.1 126 67.5
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 9.1e-42 173.7 112 73.2
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 9.1e-42 173.7 112 73.2
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.2e-41 173.3 109 75.2
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.2e-41 173.3 113 70.8
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 1.2e-41 173.3 114 72.8
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 1.6e-41 172.9 121 66.9
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.6e-41 172.9 112 73.2
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 2.0e-41 172.6 125 64.8
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 2.7e-41 172.2 121 66.9
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.7e-41 172.2 113 70.8
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 3.5e-41 171.8 112 70.5
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 3.5e-41 171.8 112 71.4
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 4.5e-41 171.4 121 67.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 5.9e-41 171.0 120 65.8
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-40 169.9 125 61.6
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 2.2e-40 169.1 125 61.6
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.2e-40 169.1 120 69.2
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.9e-40 168.7 113 72.6
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 2.9e-40 168.7 113 68.1
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.9e-40 168.7 124 65.3
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 3.8e-40 168.3 109 71.6
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 3.8e-40 168.3 109 71.6
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 3.8e-40 168.3 109 71.6
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 5.0e-40 167.9 125 60.8
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 6.5e-40 167.5 109 71.6
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 8.5e-40 167.2 109 71.6
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 8.5e-40 167.2 109 71.6
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 8.5e-40 167.2 109 71.6
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.5e-39 166.4 112 69.6
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.9e-39 166.0 119 66.4
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-39 165.6 109 70.6
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 4.2e-39 164.9 119 62.2
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 9.4e-39 163.7 109 67.0
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.1e-38 162.5 124 61.3
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 2.7e-38 162.2 120 64.2
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.0e-37 160.2 161 51.6
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 5.2e-37 157.9 160 53.1
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 6.8e-37 157.5 99 73.7
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 3.4e-36 155.2 99 72.7
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 5.7e-36 154.5 126 61.1
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.7e-35 152.9 120 62.5
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 4.8e-35 151.4 98 69.4
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 8.3e-35 150.6 109 66.1
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 8.3e-35 150.6 109 66.1
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.4e-34 149.1 99 73.7
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 3.1e-34 148.7 121 61.2
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 9.1e-34 147.1 111 64.0
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 4.5e-33 144.8 113 63.7
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 7.7e-33 144.1 110 65.5
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.0e-32 143.7 135 55.6
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 3.2e-31 138.7 120 55.0
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.2e-31 138.3 116 58.6
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 7.2e-31 137.5 86 70.9
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.1e-30 136.0 109 60.6
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.1e-30 136.0 109 60.6
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 4.7e-30 134.8 109 58.7
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 2.2e-27 125.9 77 74.0
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 4.9e-27 124.8 109 56.9
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 4.9e-27 124.8 70 85.7
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 8.3e-27 124.0 109 51.4
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 1.8e-26 122.9 112 51.8
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.1e-26 122.1 69 87.0
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.5e-23 113.2 85 67.1
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.3e-23 111.7 113 55.8
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.6e-22 109.8 134 48.5
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-22 109.8 75 61.3
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 3.6e-22 108.6 120 50.0
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 8.0e-22 107.5 71 67.6
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.0e-21 107.1 98 61.2
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 4.0e-21 105.1 69 69.6
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 6.8e-21 104.4 69 75.4
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.2e-20 103.6 75 61.3
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.3e-19 100.1 101 55.4
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 5.9e-17 91.3 110 41.8
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 5.9e-17 91.3 129 45.0
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 1.6e-14 83.2 127 36.2
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.1e-14 82.8 130 35.4
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 2.3e-13 79.3 66 60.6
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 4.7e-06 55.1 39 69.2


User provided reference genes

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