Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.2e-83 313.2 159 100.0
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 2.0e-51 206.1 154 67.5
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.7e-51 205.7 156 64.7
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 5.0e-50 201.4 141 70.2
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 8.6e-50 200.7 153 66.7
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 1.5e-49 199.9 153 66.0
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.5e-49 199.9 153 66.0
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 1.9e-49 199.5 140 67.1
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 4.3e-49 198.4 156 66.7
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 3.6e-48 195.3 155 63.2
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.8e-47 193.0 144 67.4
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 2.3e-47 192.6 139 68.3
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 4.0e-47 191.8 144 67.4
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 8.9e-47 190.7 140 65.7
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 2.0e-46 189.5 140 65.7
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 7.5e-46 187.6 148 62.8
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 1.4e-44 183.3 142 59.9
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 3.2e-44 182.2 134 65.7
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 3.2e-44 182.2 155 58.1
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 4.1e-44 181.8 139 64.0
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 5.4e-44 181.4 139 61.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 9.2e-44 180.6 139 61.2
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 9.2e-44 180.6 139 60.4
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.6e-43 179.9 134 63.4
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.6e-43 179.9 150 61.3
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.7e-43 179.1 139 61.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 6.0e-43 177.9 139 61.9
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 7.8e-43 177.6 139 59.0
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 7.8e-43 177.6 158 58.9
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 7.8e-43 177.6 156 57.7
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 1.3e-42 176.8 154 57.1
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.3e-42 176.8 139 65.5
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 5.0e-42 174.9 139 61.2
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 8.6e-42 174.1 155 56.1
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.1e-41 173.7 139 61.9
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.1e-41 173.7 139 61.2
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 1.1e-41 173.7 157 54.8
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 1.5e-41 173.3 153 56.9
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 1.9e-41 172.9 156 53.8
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.9e-41 172.9 136 60.3
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.5e-41 172.6 155 54.2
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 2.5e-41 172.6 138 60.9
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 3.3e-41 172.2 138 61.6
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.3e-41 172.2 134 62.7
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 4.3e-41 171.8 142 58.5
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 4.3e-41 171.8 138 60.1
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 5.6e-41 171.4 137 59.1
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 5.6e-41 171.4 157 56.1
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 9.5e-41 170.6 136 60.3
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 9.5e-41 170.6 137 60.6
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 9.5e-41 170.6 136 61.0
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.2e-40 170.2 142 58.5
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.2e-40 170.2 156 57.1
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.6e-40 169.9 137 60.6
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.6e-40 169.9 147 53.7
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.6e-40 169.9 134 63.4
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.8e-40 169.1 137 62.0
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 2.8e-40 169.1 136 61.0
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 3.6e-40 168.7 148 56.1
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 4.7e-40 168.3 153 55.6
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 8.1e-40 167.5 137 59.9
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 8.1e-40 167.5 138 60.9
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 8.1e-40 167.5 137 60.6
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 8.1e-40 167.5 138 59.4
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.4e-39 166.8 142 57.7
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.4e-39 166.8 156 56.4
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 1.8e-39 166.4 130 65.4
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 2.3e-39 166.0 136 56.6
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 2.3e-39 166.0 137 58.4
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.1e-39 165.6 139 60.4
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 3.1e-39 165.6 139 58.3
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 4.0e-39 165.2 148 56.1
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.0e-39 165.2 136 58.8
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 5.2e-39 164.9 138 58.7
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 5.2e-39 164.9 104 73.1
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 6.8e-39 164.5 138 58.7
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 6.8e-39 164.5 136 57.4
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 6.8e-39 164.5 130 61.5
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 6.8e-39 164.5 137 60.6
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 6.8e-39 164.5 136 57.4
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 8.9e-39 164.1 136 57.4
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 8.9e-39 164.1 155 54.8
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 2.6e-38 162.5 137 59.1
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 2.6e-38 162.5 136 56.6
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 2.6e-38 162.5 155 55.5
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 3.4e-38 162.2 138 58.7
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 7.5e-38 161.0 141 55.3
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.3e-37 160.2 136 55.9
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 2.2e-37 159.5 151 52.3
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 2.9e-37 159.1 158 50.0
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 2.9e-37 159.1 134 53.0
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 6.4e-37 157.9 134 54.5
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 8.3e-37 157.5 136 57.4
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.4e-36 156.8 143 54.5
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.9e-36 156.4 143 56.6
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.9e-36 156.4 159 52.8
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 1.9e-36 156.4 142 57.0
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 4.1e-36 155.2 133 57.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 9.2e-36 154.1 137 55.5
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 7.8e-35 151.0 131 54.2
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.0e-34 150.6 151 51.7
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.7e-34 149.8 151 51.7
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 3.3e-33 145.6 157 48.4
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 1.8e-31 139.8 110 62.7
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 4.0e-31 138.7 141 51.8
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 2.9e-29 132.5 121 56.2
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.4e-28 130.2 97 64.9
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.9e-28 129.8 97 63.9
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 1.9e-28 129.8 152 48.0
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.1e-28 128.6 98 62.2
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 9.2e-28 127.5 136 48.5
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 2.1e-27 126.3 148 48.0
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 6.6e-26 121.3 129 44.2
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 6.6e-26 121.3 131 45.8
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 2.5e-25 119.4 138 45.7
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.2e-24 117.1 138 44.9
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.8e-23 113.2 76 68.4
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 4.2e-20 102.1 107 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.7e-18 96.7 116 46.6
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 6.6e-18 94.7 148 36.5
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 4.8e-16 88.6 142 39.4
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 4.8e-16 88.6 64 64.1
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 6.2e-16 88.2 83 55.4
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 4.0e-15 85.5 70 60.0
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.5e-14 83.6 138 36.2
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 1.3e-13 80.5 90 46.7
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 4.9e-13 78.6 72 55.6
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 6.0e-11 71.6 76 48.7
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 2.1e-08 63.2 50 58.0
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.6e-08 62.4 91 42.9
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 2.4e-07 59.7 41 56.1


User provided reference genes

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