Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.5e-200 703.4 584 100.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.4e-134 484.2 525 70.1
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.6e-93 347.8 591 56.7
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-88 331.6 594 57.1
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.0e-88 330.9 594 59.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 6.5e-87 325.9 593 51.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.4e-86 324.7 590 58.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.5e-86 323.9 593 58.3
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.5e-86 323.9 600 60.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 7.2e-86 322.4 596 53.9
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.7e-85 319.7 600 58.8
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.1e-85 319.3 587 63.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 6.1e-85 319.3 604 56.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.4e-84 318.2 588 59.9
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.8e-84 317.8 482 60.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.5e-83 314.7 579 50.3
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 3.3e-83 313.5 515 61.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.7e-82 310.1 479 65.6
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.1e-81 308.5 583 57.3
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.0e-81 305.8 589 51.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.6e-80 303.9 597 52.4
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 4.5e-80 303.1 588 56.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.9e-79 300.4 584 50.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 3.8e-79 300.1 586 56.3
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 6.5e-79 299.3 596 55.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 8.5e-79 298.9 592 55.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.9e-78 297.7 606 52.5
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.9e-78 297.7 589 53.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.9e-78 297.7 592 57.6
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.5e-78 297.4 586 56.1
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 3.2e-78 297.0 594 56.4
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.2e-78 297.0 583 62.4
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.2e-78 297.0 590 57.8
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 2.1e-77 294.3 595 58.3
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 4.7e-77 293.1 584 55.3
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.7e-77 293.1 600 56.5
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.3e-76 290.8 527 65.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 2.3e-76 290.8 585 52.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.0e-76 290.0 605 52.1
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.6e-75 287.3 593 53.5
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.7e-75 286.2 600 57.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 7.5e-75 285.8 618 54.7
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.3e-74 285.0 505 61.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.7e-74 284.6 610 51.8
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.8e-74 283.9 600 59.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.8e-74 283.1 488 66.0
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.8e-74 283.1 588 57.1
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.4e-73 280.8 175 83.4
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.4e-73 280.8 181 80.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.1e-73 280.4 631 50.2
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 3.1e-73 280.4 588 49.8
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 7.0e-73 279.3 593 57.7
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.1e-73 278.9 176 79.5
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.6e-72 278.1 642 57.2
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 2.0e-72 277.7 592 52.0
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.0e-72 277.7 568 61.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.5e-72 276.6 497 61.4
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 5.9e-72 276.2 175 81.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 7.7e-72 275.8 601 49.8
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.7e-72 275.8 168 83.3
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.0e-71 275.4 529 49.5
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.7e-71 274.6 624 53.4
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.7e-71 274.6 171 81.9
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.2e-71 274.2 180 78.3
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 2.2e-71 274.2 184 77.2
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.9e-71 273.9 478 60.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.8e-71 273.5 642 56.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.5e-71 272.7 597 44.2
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 8.5e-71 272.3 479 63.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.9e-70 271.2 576 59.5
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.5e-70 270.8 584 56.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 4.2e-70 270.0 598 57.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 5.5e-70 269.6 616 53.1
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.5e-70 269.6 618 53.6
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 7.2e-70 269.2 598 51.0
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 9.4e-70 268.9 626 53.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.6e-69 268.1 181 76.8
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.6e-69 266.9 615 58.0
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 4.7e-69 266.5 623 50.1
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 4.7e-69 266.5 165 81.8
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.8e-68 264.6 587 59.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.3e-68 264.2 585 56.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.3e-68 264.2 163 82.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 3.0e-68 263.8 165 80.0
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.0e-68 263.8 475 60.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.2e-68 263.1 579 58.2
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 5.2e-68 263.1 603 53.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.8e-68 262.7 177 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.2e-67 261.9 160 81.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.2e-67 261.9 608 52.6
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.2e-67 261.9 611 49.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.5e-67 261.5 177 75.1
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.6e-67 260.8 577 59.1
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.3e-66 258.5 172 78.5
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-66 258.5 187 74.9
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.2e-66 257.7 164 79.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.8e-66 257.3 176 76.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 6.3e-66 256.1 162 79.6
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 8.3e-66 255.8 163 80.4
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 8.3e-66 255.8 186 73.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.1e-65 253.8 174 78.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 9.1e-65 252.3 182 72.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.7e-64 250.8 478 53.3
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-64 250.8 174 74.1
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.3e-63 248.4 524 54.6
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.7e-63 248.1 598 57.9
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.2e-63 247.7 147 84.4
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.8e-63 246.9 486 60.5
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.9e-62 244.6 173 74.0
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 2.5e-62 244.2 530 57.2
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 4.2e-62 243.4 477 60.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.5e-62 243.0 155 79.4
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.2e-61 241.9 598 51.7
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-61 240.4 135 86.7
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.6e-61 240.4 135 86.7
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 4.7e-61 240.0 480 59.0
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.0e-60 238.8 599 49.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-60 238.4 134 86.6
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.6e-59 234.2 133 85.7
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.4e-59 233.4 134 85.1
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-59 233.0 133 85.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-59 232.3 132 85.6
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-58 230.7 132 85.6
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.8e-58 230.7 590 45.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.9e-58 229.9 479 51.4
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-57 228.0 124 89.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-57 227.3 129 86.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.1e-57 226.9 150 80.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 9.1e-57 225.7 164 72.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-56 224.6 129 85.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-56 223.4 477 50.3
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 7.7e-56 222.6 132 82.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-55 221.9 186 67.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-55 220.7 130 83.1
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-54 218.8 478 52.3
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-54 217.2 177 68.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 7.2e-54 216.1 171 67.8
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 4.7e-53 213.4 135 82.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-53 213.0 173 69.4
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 6.1e-53 213.0 173 69.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.5e-51 208.4 181 62.4
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.4e-51 206.8 182 63.7
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 2.2e-50 204.5 575 42.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.9e-47 193.7 128 78.1
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 9.5e-46 189.1 165 63.0
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 4.0e-44 183.7 127 73.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 5.8e-43 179.9 100 89.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 7.5e-43 179.5 125 76.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 7.5e-43 179.5 155 67.7
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-41 174.5 132 70.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-39 166.8 103 78.6
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.1e-38 165.6 106 78.3
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.4e-36 158.7 164 56.7
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.2e-34 151.4 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 5.4e-33 146.7 186 50.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-31 142.5 84 82.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.5e-30 138.7 175 52.0
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.5e-30 137.9 84 79.8
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.8e-29 134.4 147 48.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 6.8e-28 129.8 70 92.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-27 127.9 85 72.9
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 4.4e-27 127.1 178 49.4
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 7.6e-27 126.3 85 71.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.2e-24 119.0 65 90.8
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.7e-23 115.2 180 45.0
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-22 110.9 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 5.6e-22 110.2 67 80.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 8.9e-20 102.8 522 42.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 3.4e-19 100.9 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.2e-17 94.4 56 85.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.0e-15 87.8 54 79.6
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 4.3e-14 84.0 56 76.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.8e-12 78.6 230 32.6
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-12 77.8 84 53.6
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 9.9e-11 72.8 55 63.6
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 9.3e-09 66.2 49 63.3
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.2e-08 65.9 84 51.2


User provided reference genes

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