Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 4.9e-121 439.1 545 100.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 4.4e-61 240.0 215 57.2
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 8.5e-57 225.7 214 54.7
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.0e-54 217.2 237 50.6
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 2.6e-53 214.2 211 52.6
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 9.8e-53 212.2 212 52.8
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 6.1e-47 193.0 215 45.6
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.6e-45 187.6 212 46.2
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 9.8e-45 185.7 189 52.4
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 9.2e-43 179.1 207 51.2
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 2.0e-42 177.9 215 45.1
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.1e-40 172.2 198 48.5
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.9e-40 171.4 215 41.9
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.9e-40 171.4 215 44.2
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.9e-40 171.4 198 47.0
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 7.3e-40 169.5 215 44.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.1e-39 167.9 212 41.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.6e-39 167.2 214 42.1
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.0e-38 165.6 215 41.4
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 2.3e-38 164.5 214 41.6
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 5.2e-38 163.3 215 40.9
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.0e-37 161.4 215 40.0
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.6e-37 161.0 215 40.9
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.4e-37 160.6 215 41.9
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.1e-35 155.6 215 41.4
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-35 155.6 209 43.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 5.4e-35 153.3 208 41.8
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.0e-35 152.9 200 43.5
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 4.6e-34 150.2 206 40.3
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 4.6e-34 150.2 216 39.4
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.3e-33 148.7 204 39.2
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.3e-32 144.1 201 40.3
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.6e-31 141.7 209 41.6
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.4e-30 138.7 215 37.7
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 4.0e-30 137.1 208 40.9
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 8.9e-30 136.0 223 35.9
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 5.8e-29 133.3 216 36.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 9.8e-29 132.5 167 40.7
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 1.3e-28 132.1 202 37.6
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.9e-28 131.0 203 36.0
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 2.9e-28 131.0 214 35.5
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.4e-27 128.6 208 38.0
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.9e-27 128.3 216 34.7
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 2.4e-27 127.9 163 40.5
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.4e-27 127.9 212 35.8
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-27 127.9 212 37.3
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.2e-27 127.5 185 38.9
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.1e-27 127.1 163 43.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 7.1e-27 126.3 208 34.1
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.1e-26 124.8 198 34.8
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 2.1e-26 124.8 172 38.4
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.6e-26 123.6 211 36.5
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.3e-25 122.1 182 38.5
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-25 121.3 219 35.6
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.9e-25 120.6 208 37.0
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.5e-24 118.6 216 36.6
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.3e-24 117.5 184 37.0
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 5.6e-24 116.7 206 35.4
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.2e-23 115.5 216 35.2
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.2e-23 115.5 207 33.3
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-22 112.5 213 31.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 1.4e-22 112.1 217 31.8
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.8e-22 111.7 216 34.7
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.8e-22 111.7 215 32.1
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.3e-22 111.3 208 34.1
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.3e-22 111.3 215 33.5
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 3.1e-22 110.9 181 32.0
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.1e-22 110.9 208 34.1
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.1e-22 110.9 162 35.8
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 4.0e-22 110.5 165 35.2
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 4.0e-22 110.5 215 32.6
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 5.2e-22 110.2 196 35.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 2.6e-21 107.8 218 33.0
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.6e-21 107.8 215 31.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 2.6e-21 107.8 202 31.7
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.6e-21 107.8 173 32.9
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 5.8e-21 106.7 208 29.8
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.8e-21 106.7 213 30.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 7.6e-21 106.3 184 35.9
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.3e-20 105.5 176 35.2
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.2e-20 104.8 182 33.5
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.2e-20 104.8 182 33.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 4.9e-20 103.6 216 31.0
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.3e-20 102.8 182 33.5
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.4e-19 102.1 200 35.5
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.4e-19 101.3 175 32.6
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.2e-19 100.9 220 31.8
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.1e-19 100.5 182 34.1
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 4.1e-19 100.5 196 32.1
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 9.2e-19 99.4 191 33.0
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.2e-18 99.0 111 43.2
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.1e-18 98.2 214 32.2
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 2.7e-18 97.8 194 31.4
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 1.0e-17 95.9 148 34.5
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.0e-17 95.9 170 31.8
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.0e-17 95.9 204 32.4
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.0e-17 95.9 209 32.5
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.3e-17 95.5 163 33.7
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.3e-17 95.5 173 32.9
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.7e-17 95.1 215 27.9
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.0e-17 94.4 166 35.5
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 3.0e-17 94.4 195 31.3
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.1e-17 93.6 114 42.1
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 6.6e-17 93.2 216 28.7
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.9e-16 91.7 172 32.6
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.3e-16 90.9 135 35.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.6e-15 88.6 176 33.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 2.1e-15 88.2 161 32.9
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 4.7e-15 87.0 201 27.9
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 8.1e-15 86.3 59 62.7
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.1e-14 84.3 137 29.2
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 3.1e-14 84.3 179 28.5
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 6.8e-14 83.2 95 44.2
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 6.8e-14 83.2 109 38.5
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.5e-13 82.0 196 29.6
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.6e-13 81.3 195 27.2
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 3.4e-13 80.9 176 31.8
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.8e-13 80.1 217 27.6
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 9.9e-13 79.3 202 26.2
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.9e-12 77.8 100 39.0
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 8.4e-12 76.3 164 28.7
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.6e-10 72.0 163 30.7
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 4.6e-10 70.5 210 27.1
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.0e-09 69.3 203 27.6
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.3e-09 68.2 130 40.8
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.3e-09 68.2 86 37.2
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 3.0e-09 67.8 197 28.4
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 5.1e-09 67.0 210 28.6
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 6.6e-09 66.6 126 33.3
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.7e-09 66.2 177 29.4
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.1e-08 65.9 181 27.6
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.1e-08 65.9 145 27.6
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 4.3e-08 63.9 207 29.0
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 7.3e-08 63.2 207 29.0
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.3e-07 62.4 213 27.7
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 2.8e-07 61.2 213 27.2
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 8.1e-07 59.7 194 28.9
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 1.1e-06 59.3 213 26.8
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.4e-06 58.2 85 31.8
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 3.1e-06 57.8 89 34.8
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 3.1e-06 57.8 94 31.9
ECA238G3047 Erigeron canadensis HOM05D004255 ORTHO05D004815 4.0e-06 57.4 50 52.0
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 5.3e-06 57.0 79 34.2


User provided reference genes

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