Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 0.0e+00 1099.3 575 100.0
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 8.6e-217 757.3 565 70.3
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.3e-216 755.0 565 70.1
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 7.3e-216 754.2 565 68.3
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 5.2e-214 748.0 575 68.2
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.6e-213 745.7 573 67.7
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.6e-213 745.7 565 68.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 6.2e-207 724.5 566 67.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.4e-206 723.4 572 66.6
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 8.9e-206 720.7 604 64.4
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.7e-204 715.3 569 67.3
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.7e-204 715.3 571 66.5
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 6.4e-204 714.5 566 64.7
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 5.4e-203 711.4 576 64.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 7.1e-203 711.1 568 65.1
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 9.2e-203 710.7 570 65.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.2e-202 710.3 580 64.5
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.9e-200 703.0 566 64.1
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.5e-200 702.6 571 64.1
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 4.3e-200 701.8 567 64.0
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 4.7e-199 698.4 569 62.6
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.1e-198 697.2 575 65.2
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.4e-198 696.0 566 64.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.6e-197 692.6 573 62.1
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 7.6e-197 691.0 573 63.4
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.9e-197 690.6 566 64.0
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.3e-196 690.3 572 64.2
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.4e-196 687.6 568 63.2
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.2e-194 683.7 570 63.2
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.2e-194 683.7 575 63.8
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.0e-193 680.6 565 63.0
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 5.1e-193 678.3 566 62.2
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 9.6e-192 674.1 510 68.6
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.6e-191 673.3 566 60.2
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.4e-190 669.5 575 61.2
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.5e-189 666.8 566 59.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 5.8e-189 664.8 570 62.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 7.6e-189 664.5 603 60.7
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 9.9e-189 664.1 567 62.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 9.9e-189 664.1 567 63.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.7e-188 663.3 568 62.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.9e-188 661.8 566 61.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-187 660.6 573 60.9
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.1e-187 660.6 567 62.8
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.2e-187 659.1 572 61.7
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.2e-187 658.7 571 61.3
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.2e-187 658.7 573 60.7
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 9.3e-187 657.5 566 61.3
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.7e-186 656.0 567 61.9
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.0e-186 654.8 578 60.4
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 6.0e-186 654.8 567 61.7
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 7.9e-186 654.4 568 61.8
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.9e-185 652.1 594 60.4
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.7e-185 651.0 573 60.6
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 9.6e-184 647.5 576 60.4
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.1e-183 646.4 551 63.2
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.1e-182 642.5 573 58.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.1e-182 642.5 566 60.2
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 5.3e-182 641.7 576 60.9
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.2e-181 640.6 572 59.6
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.6e-181 639.4 499 64.5
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.7e-180 636.7 569 59.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.2e-180 636.3 569 61.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.1e-179 634.0 473 69.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.4e-179 632.9 573 58.8
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 7.1e-179 631.3 590 58.8
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.2e-178 630.6 568 59.2
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.5e-178 629.0 568 59.7
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.5e-178 629.0 569 59.2
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.8e-177 626.7 567 60.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.0e-177 625.9 567 59.3
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 5.1e-177 625.2 568 58.5
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.3e-176 622.5 567 60.7
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 4.3e-176 622.1 568 58.3
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.7e-175 619.0 566 59.2
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 4.8e-175 618.6 568 58.8
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 8.1e-175 617.8 520 62.9
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 4.0e-174 615.5 564 57.4
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 5.3e-174 615.1 564 57.4
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 5.3e-174 615.1 564 57.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 6.9e-174 614.8 567 57.0
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.5e-173 613.6 567 56.8
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 3.4e-173 612.5 593 56.0
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.4e-173 612.5 566 57.8
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-170 603.6 580 56.6
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 4.6e-170 602.1 568 57.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 3.0e-169 599.4 508 65.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.1e-168 597.4 569 57.3
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.9e-168 596.7 598 56.4
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 4.5e-165 585.5 579 57.2
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 8.4e-164 581.3 601 54.4
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.4e-163 580.5 462 65.2
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.5e-163 579.7 471 65.2
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 7.2e-163 578.2 565 57.0
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 5.1e-161 572.0 649 52.1
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.5e-160 569.7 503 60.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 6.5e-156 555.1 480 61.2
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.4e-153 547.4 585 56.2
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 3.9e-153 545.8 510 56.5
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 5.3e-150 535.4 400 70.8
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 6.9e-150 535.0 536 53.9
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 9.1e-150 534.6 580 53.8
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 3.7e-143 512.7 486 57.2
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 9.1e-142 508.1 349 74.2
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 7.7e-141 505.0 575 51.3
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 3.2e-139 499.6 556 51.3
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.3e-136 489.6 516 53.5
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.2e-135 486.9 403 65.0
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.8e-135 485.7 349 69.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 6.5e-132 475.3 527 52.0
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.1e-130 468.8 334 71.6
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 8.0e-114 415.2 244 85.2
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 8.0e-114 415.2 244 85.2
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.8e-113 412.1 243 85.2
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.0e-112 410.6 369 59.3
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 6.4e-111 405.6 486 49.2
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.3e-100 371.3 233 77.7
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.2e-97 359.4 279 65.6
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.8e-93 345.5 192 88.0
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-91 341.7 342 54.1
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-91 341.7 424 48.6
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 9.5e-91 338.6 415 51.1
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.6e-90 337.8 419 46.8
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 9.2e-86 322.0 398 47.0
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.1e-83 315.1 580 37.2
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.4e-81 308.1 305 51.5
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.7e-79 301.2 395 45.3
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 7.1e-78 295.8 580 35.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 3.5e-77 293.5 159 85.5
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 7.9e-69 265.8 381 46.5
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 9.9e-64 248.8 143 83.9
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.2e-62 243.8 143 86.0
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.0e-61 239.6 143 83.9
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.3e-60 238.4 239 58.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 7.4e-59 232.6 462 35.7
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 4.0e-57 226.9 134 83.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.2e-56 225.3 128 89.8
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-49 202.2 556 28.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 8.7e-44 182.6 233 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 9.1e-41 172.6 492 29.1
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.3e-35 154.1 88 87.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.6e-32 144.4 92 79.3
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.0e-27 128.3 164 42.1
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.4e-25 122.1 268 35.4
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.5e-23 112.8 173 41.6
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.1e-21 108.2 132 47.7
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.8e-20 105.1 211 37.4
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.0e-20 104.0 254 29.5
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.8e-18 97.1 122 42.6
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 5.3e-17 93.6 254 29.1
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.6e-16 92.0 52 86.5
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 5.0e-15 87.0 45 88.9
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 6.8e-12 76.6 93 48.4
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 7.7e-08 63.2 317 25.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.1e-06 59.3 198 28.3


User provided reference genes

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