Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 5.9e-77 290.8 149 100.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.7e-53 212.2 124 86.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.3e-52 209.1 126 81.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.0e-52 208.0 125 84.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 8.6e-52 207.2 126 82.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.5e-51 206.5 125 80.8
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.9e-51 206.1 126 80.2
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.3e-51 205.3 125 79.2
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 5.6e-51 204.5 126 78.6
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 5.6e-51 204.5 125 80.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 7.3e-51 204.1 121 81.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 9.5e-51 203.8 130 79.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 9.5e-51 203.8 126 78.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 9.5e-51 203.8 126 78.6
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.6e-50 203.0 123 80.5
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.1e-50 202.6 123 79.7
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.1e-50 202.6 120 82.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.1e-50 202.6 121 81.0
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.1e-50 202.6 120 82.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.8e-50 202.2 122 81.1
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.8e-50 202.2 120 82.5
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.8e-50 202.2 126 79.4
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.8e-50 202.2 126 79.4
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.8e-50 202.2 133 76.7
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.6e-50 201.8 121 80.2
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.7e-50 201.4 125 80.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 6.2e-50 201.1 126 77.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 6.2e-50 201.1 122 82.8
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 6.2e-50 201.1 120 81.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.2e-50 201.1 121 79.3
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 6.2e-50 201.1 126 77.8
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 6.2e-50 201.1 118 84.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.1e-49 200.3 133 75.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-49 199.5 125 76.8
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.1e-49 198.7 123 78.0
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.2e-49 198.0 126 76.2
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 5.2e-49 198.0 120 79.2
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.2e-49 198.0 121 78.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.8e-49 197.6 126 77.8
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 6.8e-49 197.6 124 77.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 8.9e-49 197.2 130 78.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.2e-48 196.8 123 75.6
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.0e-48 196.1 126 74.6
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-48 195.7 125 77.6
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.4e-48 195.3 125 77.6
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.4e-48 194.9 130 75.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 4.4e-48 194.9 121 77.7
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 5.8e-48 194.5 117 81.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 7.5e-48 194.1 129 75.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 7.5e-48 194.1 121 78.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 9.8e-48 193.7 133 71.4
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 9.8e-48 193.7 126 73.8
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.8e-48 193.7 120 78.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.7e-47 193.0 118 79.7
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.7e-47 193.0 123 76.4
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.2e-47 192.6 126 77.8
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.2e-47 192.6 130 74.6
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.7e-47 191.8 122 77.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 4.9e-47 191.4 120 78.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.9e-47 191.4 121 76.9
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-46 190.3 125 76.8
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.4e-46 189.9 130 73.1
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-46 189.9 130 73.1
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.4e-46 189.9 130 73.1
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.9e-46 189.5 119 77.3
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.4e-46 189.1 130 73.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.4e-46 189.1 130 73.1
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-46 188.7 129 73.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 4.1e-46 188.3 124 73.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 5.4e-46 188.0 124 75.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 7.0e-46 187.6 121 74.4
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 9.2e-46 187.2 128 74.2
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 9.2e-46 187.2 124 73.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-45 186.8 128 73.4
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-45 186.8 130 71.5
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.2e-45 186.8 110 81.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.2e-45 186.8 120 77.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.2e-45 186.8 120 77.5
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.6e-45 186.4 110 80.9
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.7e-45 185.7 128 73.4
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 3.5e-45 185.3 123 72.4
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.6e-45 184.9 119 74.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.6e-45 184.9 125 74.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.6e-45 184.9 140 65.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 6.0e-45 184.5 116 76.7
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 7.8e-45 184.1 121 74.4
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 7.8e-45 184.1 116 75.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-44 183.7 123 74.0
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.3e-44 183.3 114 78.1
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.3e-44 182.6 117 76.1
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.9e-44 181.8 117 76.9
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.0e-44 181.4 105 83.8
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 8.6e-44 180.6 121 71.9
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.9e-43 179.5 117 72.6
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.9e-43 179.5 117 72.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-43 178.7 128 70.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 5.6e-43 177.9 124 72.6
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 7.3e-43 177.6 107 79.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.1e-42 176.0 108 80.6
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 3.6e-42 175.3 117 70.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 8.1e-42 174.1 124 71.0
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.0e-41 171.8 121 70.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 6.8e-41 171.0 119 73.9
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 5.8e-40 167.9 121 71.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 9.9e-40 167.2 124 68.5
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.2e-39 166.0 104 76.0
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.2e-39 166.0 124 67.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 4.9e-39 164.9 123 64.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-38 163.7 99 82.8
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.9e-38 162.9 98 80.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.9e-38 162.9 119 68.9
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 7.1e-38 161.0 98 79.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.2e-37 160.2 98 81.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 7.8e-37 157.5 122 65.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.9e-36 155.2 106 69.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.9e-36 155.2 127 65.4
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.1e-36 154.8 90 80.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.6e-36 154.5 123 65.0
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 8.6e-36 154.1 122 64.8
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.3e-35 151.0 144 57.6
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 9.5e-35 150.6 123 64.2
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.2e-34 147.9 99 72.7
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.1e-33 147.1 95 75.8
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.8e-33 146.4 98 73.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.8e-33 146.4 98 73.5
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.5e-32 143.3 121 57.0
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.0e-32 142.9 88 79.5
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 4.9e-31 138.3 83 77.1
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.4e-30 136.7 112 64.3
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.4e-30 136.7 107 64.5
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-30 136.3 100 69.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 5.4e-30 134.8 81 76.5
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 6.0e-29 131.3 113 58.4
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 7.8e-29 131.0 89 70.8
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.0e-28 130.6 104 62.5
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 8.7e-28 127.5 118 55.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.1e-27 127.1 126 55.6
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 5.6e-27 124.8 88 64.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.6e-26 122.1 121 47.9
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.8e-25 119.8 115 56.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.8e-25 119.8 114 51.8
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 6.9e-25 117.9 118 53.4
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.2e-24 117.1 116 54.3
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.0e-24 116.3 114 50.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.0e-24 116.3 118 50.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.4e-24 115.5 85 67.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 7.6e-24 114.4 114 50.9
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.2e-23 112.8 128 50.0
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.2e-23 112.8 109 52.3
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.9e-22 109.8 135 48.1
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 4.2e-22 108.6 129 45.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.0e-20 102.4 76 71.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.5e-19 99.4 56 80.4
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 9.6e-19 97.4 61 75.4
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 4.0e-09 65.5 57 49.1
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.4e-08 62.4 75 44.0
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.4e-07 57.8 79 44.3
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 1.1e-06 57.4 111 35.1
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.1e-06 57.4 111 33.3
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 1.4e-06 57.0 111 36.0
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.4e-06 57.0 111 35.1
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 1.9e-06 56.6 111 35.1
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 1.9e-06 56.6 111 35.1
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 1.9e-06 56.6 111 35.1
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 2.4e-06 56.2 111 34.2
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 2.4e-06 56.2 111 31.5
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.4e-06 56.2 111 34.2
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 3.2e-06 55.8 111 33.3
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 3.2e-06 55.8 111 34.2
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 5.5e-06 55.1 111 35.1
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 9.3e-06 54.3 111 32.4
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 9.3e-06 54.3 111 33.3


User provided reference genes

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