Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 2391.3 1243 100.0
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1335.1 1260 58.7
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1328.5 1259 57.9
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1328.2 1257 57.7
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1315.1 1292 58.0
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1295.8 1258 56.9
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1273.8 1257 57.8
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1268.1 1257 57.7
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1257.3 1211 57.6
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1251.1 1238 56.9
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1251.1 1250 57.0
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1249.2 1238 56.8
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1247.6 1242 56.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1243.8 1257 57.0
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1239.9 1247 56.5
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1237.6 1235 56.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1236.1 1244 57.2
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1235.7 1248 55.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1231.1 1259 55.1
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1228.8 1236 56.4
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1221.8 1243 55.5
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1214.1 1202 55.5
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1213.4 615 98.0
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1212.6 1203 56.5
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1205.7 1091 61.2
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1203.3 1247 55.6
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1194.9 1207 54.8
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1194.1 1184 55.2
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1191.8 1314 53.0
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1186.8 1260 53.7
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1181.4 1303 53.0
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1181.0 1291 52.7
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1179.5 1260 54.1
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1177.5 1258 53.8
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1174.1 1196 54.7
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1172.1 1260 53.5
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1172.1 1251 55.3
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 0.0e+00 1161.4 1241 52.6
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1153.3 1244 53.7
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1147.9 1207 53.5
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1145.2 1210 53.5
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1141.7 1177 55.1
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1135.9 1243 54.5
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1135.6 1252 52.9
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1133.6 1250 53.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 0.0e+00 1133.6 1170 55.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1125.5 1315 51.3
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1124.8 1253 52.9
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1124.0 1257 52.3
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1123.2 1247 52.6
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1118.2 1210 52.1
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1115.1 1253 53.2
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1106.7 1020 60.5
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1104.4 1250 51.7
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1099.0 1243 52.9
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 0.0e+00 1095.1 1246 52.6
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 0.0e+00 1091.6 1238 52.9
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1089.3 1256 50.6
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1085.9 1249 52.5
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1085.1 1192 52.5
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1084.3 1246 50.4
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 0.0e+00 1078.9 1201 50.5
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1075.8 1276 51.2
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.3e-310 1070.1 1202 52.4
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 1.1e-309 1067.0 1253 50.0
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 7.9e-308 1060.8 1215 50.6
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.1e-305 1052.7 1237 50.1
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 4.8e-305 1051.6 1271 49.3
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 1.1e-304 1050.4 1246 50.5
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 6.4e-302 1041.2 1197 50.3
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 2.1e-300 1036.2 1189 51.1
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 2.9e-294 1015.8 1216 49.5
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 2.7e-292 1009.2 1200 49.2
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 6.5e-286 988.0 1209 48.1
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 9.1e-280 967.6 1246 48.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 3.9e-275 952.2 790 65.8
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 5.7e-274 948.3 1282 45.6
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 1.2e-268 930.6 1258 47.5
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.4e-264 916.4 1131 48.5
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 3.1e-264 916.0 1078 50.2
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.4e-259 900.6 1032 50.6
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 2.4e-256 889.8 1062 48.5
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 5.4e-248 862.1 1309 42.2
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 4.0e-235 819.3 1197 42.1
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 1.2e-231 807.7 773 57.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 4.9e-225 785.8 1247 40.4
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 8.7e-206 721.8 1224 40.6
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 3.6e-204 716.5 833 52.3
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.4e-200 703.7 977 41.9
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 3.8e-185 653.3 1192 36.9
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 5.0e-169 599.7 1236 35.4
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 8.5e-145 519.2 1245 33.0
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.6e-138 498.4 1148 35.1
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 6.8e-126 456.4 656 45.4
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 7.3e-120 436.4 387 58.4
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 7.1e-99 366.7 398 50.0
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.8e-86 325.5 445 48.8
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.5e-77 295.8 516 38.0
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.2e-66 259.6 1184 26.1
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.8e-62 245.7 393 37.7
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 5.3e-38 164.5 118 67.8
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 5.9e-37 161.0 170 55.3
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 5.9e-37 161.0 213 45.5
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 1.1e-35 156.8 157 52.2
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.1e-32 146.7 263 37.3
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 2.2e-31 142.5 126 56.3
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 6.5e-28 131.0 86 66.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 3.2e-27 128.6 79 72.2
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 4.0e-25 121.7 103 54.4
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 8.8e-25 120.6 265 31.7
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 3.2e-19 102.1 91 52.7
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.7e-15 89.7 108 50.0
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.1e-14 87.0 84 53.6
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 8.9e-09 67.4 142 32.4
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 6.4e-07 61.2 74 40.5


User provided reference genes

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