Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.6e-101 372.9 199 100.0
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 1.9e-99 365.9 199 98.5
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 4.5e-80 301.6 199 81.9
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 4.5e-80 301.6 199 81.9
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 2.9e-79 298.9 198 82.8
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 1.1e-78 297.0 197 82.2
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 3.2e-78 295.4 199 80.4
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 9.3e-78 293.9 199 81.9
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 2.7e-77 292.4 198 80.8
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 6.0e-77 291.2 198 80.3
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.3e-76 290.0 199 80.9
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 3.0e-76 288.9 199 77.9
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 8.7e-76 287.3 198 77.8
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 7.4e-75 284.3 191 78.5
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 2.8e-74 282.3 191 78.5
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 6.3e-74 281.2 191 77.5
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 6.3e-74 281.2 199 77.9
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 1.4e-73 280.0 199 78.9
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.8e-73 279.6 198 79.3
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 1.8e-73 279.6 197 77.2
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 2.4e-73 279.3 198 78.3
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 3.1e-73 278.9 200 74.0
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 4.1e-73 278.5 193 77.2
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 4.1e-73 278.5 197 78.7
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 5.3e-73 278.1 195 77.4
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 5.3e-73 278.1 199 77.4
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 5.3e-73 278.1 212 72.6
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 6.9e-73 277.7 199 77.4
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.5e-72 276.6 199 77.4
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 1.5e-72 276.6 195 78.5
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 2.0e-72 276.2 199 77.4
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 2.0e-72 276.2 199 75.9
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.6e-72 275.8 195 76.4
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 2.6e-72 275.8 199 75.9
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 4.5e-72 275.0 199 77.4
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 4.5e-72 275.0 199 76.9
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 4.5e-72 275.0 199 78.4
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 5.9e-72 274.6 200 76.5
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 7.6e-72 274.2 199 76.4
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 7.6e-72 274.2 199 76.4
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 7.6e-72 274.2 199 76.4
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 7.6e-72 274.2 199 76.4
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 1.7e-71 273.1 199 75.9
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.7e-71 273.1 199 75.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 1.7e-71 273.1 199 75.4
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 1.7e-71 273.1 199 76.9
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 2.2e-71 272.7 201 75.1
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 2.9e-71 272.3 200 75.5
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 2.9e-71 272.3 162 88.3
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 3.8e-71 271.9 199 75.9
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 3.8e-71 271.9 199 75.9
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.8e-71 271.9 199 76.4
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.8e-71 271.9 199 76.4
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 5.0e-71 271.6 191 76.4
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 6.5e-71 271.2 199 76.4
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 6.5e-71 271.2 199 76.4
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 6.5e-71 271.2 199 75.9
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 6.5e-71 271.2 199 76.9
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 75.3
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 74.7
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.9e-70 269.6 199 77.4
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 1.9e-70 269.6 199 76.4
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 2.5e-70 269.2 199 75.4
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 4.2e-70 268.5 198 74.2
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 4.2e-70 268.5 199 74.4
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 4.2e-70 268.5 198 74.2
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 7.2e-70 267.7 201 75.6
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 9.3e-70 267.3 199 77.4
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.2e-69 266.9 199 70.9
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 1.6e-69 266.5 199 76.9
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.6e-69 266.5 198 73.7
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.1e-69 266.2 199 75.4
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 1.3e-68 263.5 162 85.8
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.3e-68 263.5 199 73.9
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 1.3e-68 263.5 200 75.0
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.8e-68 263.1 199 73.4
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 3.0e-68 262.3 190 74.7
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 8.7e-68 260.8 199 70.4
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 8.7e-68 260.8 172 79.7
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 1.1e-67 260.4 148 91.2
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 1.9e-67 259.6 200 71.5
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.9e-67 259.6 199 71.4
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 3.3e-67 258.8 202 72.8
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 4.3e-67 258.5 198 71.2
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 4.3e-67 258.5 199 69.3
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 9.7e-67 257.3 198 70.7
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 1.3e-66 256.9 194 72.7
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 1.6e-66 256.5 199 69.8
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 2.2e-66 256.1 200 72.0
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 1.1e-65 253.8 171 76.0
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 3.1e-65 252.3 199 72.4
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 3.1e-65 252.3 198 70.2
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.2e-64 250.4 198 69.2
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 4.5e-64 248.4 192 72.9
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 2.2e-63 246.1 199 70.9
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 2.1e-61 239.6 195 69.7
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 1.8e-60 236.5 147 84.4
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 3.1e-57 225.7 200 60.5
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 1.6e-48 196.8 166 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 5.0e-47 191.8 167 56.3
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 4.0e-44 182.2 144 71.5
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 2.4e-41 172.9 105 87.6
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 7.0e-41 171.4 157 54.1
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.2e-39 166.4 158 53.8
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.2e-39 166.4 158 53.8
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.9e-39 166.0 158 53.2
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.9e-39 166.0 158 53.2
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 5.0e-39 165.2 161 53.4
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 3.6e-37 159.1 94 89.4
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 6.1e-37 158.3 103 82.5
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 6.8e-36 154.8 102 79.4
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 1.8e-33 146.7 103 78.6
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 2.2e-31 139.8 118 68.6
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.6e-27 126.3 90 77.8
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 3.7e-26 122.5 92 68.5
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 4.1e-25 119.0 86 69.8
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 5.0e-23 112.1 95 68.4
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 1.5e-22 110.5 71 81.7
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 2.1e-21 106.7 157 36.9
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 4.0e-20 102.4 157 36.9
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.6e-16 90.5 104 51.0
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 5.9e-16 88.6 87 59.8
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 3.0e-15 86.3 162 31.5
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.4e-12 77.4 120 43.3
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 3.7e-10 69.3 156 32.1
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.9e-09 67.0 44 68.2
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 1.0e-07 61.2 97 39.2
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 7.3e-06 55.1 48 62.5


User provided reference genes

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