Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 1.7e-76 289.3 143 100.0
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 2.9e-49 198.7 140 70.0
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 7.2e-48 194.1 140 71.4
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 2.1e-47 192.6 142 67.6
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 2.7e-47 192.2 142 66.9
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 8.0e-47 190.7 142 66.2
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.0e-46 190.3 142 66.9
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 1.4e-46 189.9 140 68.6
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 1.4e-46 189.9 143 67.8
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 2.3e-46 189.1 142 64.8
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 3.0e-46 188.7 142 66.2
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 3.0e-46 188.7 140 67.1
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 5.2e-46 188.0 143 66.4
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 5.2e-46 188.0 140 65.7
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 5.2e-46 188.0 141 65.2
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 5.2e-46 188.0 143 67.8
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 2.0e-45 186.0 140 62.9
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 2.6e-45 185.7 140 63.6
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 1.7e-44 183.0 142 63.4
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 2.2e-44 182.6 142 63.4
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 2.8e-44 182.2 142 64.1
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 8.3e-44 180.6 141 66.7
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 1.4e-43 179.9 142 63.4
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 1.4e-43 179.9 142 66.2
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 3.1e-43 178.7 141 61.7
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 4.1e-43 178.3 142 62.0
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 4.1e-43 178.3 140 63.6
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 5.4e-43 177.9 144 63.2
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 5.4e-43 177.9 142 62.0
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 1.6e-42 176.4 143 64.3
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 2.0e-42 176.0 143 62.9
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 2.0e-42 176.0 143 61.5
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 2.7e-42 175.6 148 60.1
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 2.7e-42 175.6 142 64.8
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 3.5e-42 175.3 162 54.9
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 4.5e-42 174.9 142 61.3
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 4.5e-42 174.9 141 61.0
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 4.5e-42 174.9 141 61.0
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 5.9e-42 174.5 142 59.2
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 1.0e-41 173.7 146 60.3
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 1.3e-41 173.3 143 65.0
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 2.9e-41 172.2 142 59.2
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 8.6e-41 170.6 140 61.4
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 1.9e-40 169.5 167 55.1
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 1.9e-40 169.5 141 58.9
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 1.9e-40 169.5 143 62.2
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 2.5e-40 169.1 139 60.4
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 3.3e-40 168.7 139 61.9
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 5.5e-40 167.9 141 61.0
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 5.5e-40 167.9 139 61.2
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 7.2e-40 167.5 142 57.0
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 1.6e-39 166.4 142 56.3
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 1.6e-39 166.4 142 57.0
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 1.6e-39 166.4 142 57.0
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 1.6e-39 166.4 142 57.0
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 2.8e-39 165.6 142 55.6
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 3.6e-39 165.2 142 56.3
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 3.6e-39 165.2 142 56.3
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 3.6e-39 165.2 142 59.9
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 4.7e-39 164.9 139 61.2
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 6.1e-39 164.5 142 55.6
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 6.1e-39 164.5 142 58.5
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 8.0e-39 164.1 142 58.5
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 1.0e-38 163.7 143 59.4
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 1.0e-38 163.7 140 59.3
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 1.4e-38 163.3 142 54.9
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 2.3e-38 162.5 141 60.3
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 4.0e-38 161.8 142 57.0
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 8.9e-38 160.6 142 56.3
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 8.9e-38 160.6 142 59.2
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 9.8e-37 157.1 150 54.7
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 9.8e-37 157.1 142 53.5
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 1.1e-35 153.7 142 56.3
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 2.4e-35 152.5 112 67.9
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 5.4e-35 151.4 142 55.6
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 9.2e-35 150.6 146 52.7
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 1.0e-33 147.1 139 55.4
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.0e-30 137.1 141 51.8
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 5.2e-30 134.8 141 51.1
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 8.9e-30 134.0 102 64.7
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 4.9e-28 128.3 109 61.5
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 9.2e-27 124.0 125 53.6
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 3.5e-26 122.1 109 59.6
arahy.Tifrunner.gnm1.ann1.9UEW9D Arachis hypogaea HOM05D007233 ORTHO05D009043 7.8e-26 120.9 131 47.3
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 7.8e-26 120.9 90 63.3
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.9e-25 118.6 100 60.0
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 6.6e-25 117.9 130 50.8
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 2.1e-23 112.8 145 42.1
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 2.1e-23 112.8 145 42.1
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.6e-23 112.1 97 59.8
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 2.3e-22 109.4 110 52.7
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 2.3e-22 109.4 119 52.1
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 1.5e-21 106.7 143 49.0
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 2.6e-21 105.9 148 44.6
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 9.8e-21 104.0 146 45.9
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 1.7e-20 103.2 147 42.2
Sc12g0003860 Simmondsia chinensis HOM05D007233 ORTHO05D009043 3.2e-19 99.0 89 59.6
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 1.2e-18 97.1 139 42.4
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 5.6e-16 88.2 116 41.4
Oeu035529.3 Olea europaea HOM05D007233 ORTHO05D009043 1.2e-15 87.0 90 51.1
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 6.8e-14 81.3 92 48.9
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 4.4e-13 78.6 93 52.7
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 2.7e-10 69.3 79 51.9
arahy.Tifrunner.gnm1.ann1.3ZRX2Z Arachis hypogaea HOM05D007233 ORTHO05D009043 3.5e-10 68.9 75 45.3
Duzib168G0428 Durio zibethinus HOM05D007233 ORTHO05D009043 2.3e-09 66.2 113 39.8
Potri.002G256001 Populus trichocarpa HOM05D007233 ORTHO05D009043 8.1e-07 57.8 136 36.0


User provided reference genes

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