Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 0.0e+00 1537.3 825 100.0
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 5.6e-312 1073.5 774 71.6
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 1.8e-308 1062.4 781 69.5
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 4.4e-307 1057.7 776 68.8
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.4e-305 1052.7 775 69.5
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 9.2e-305 1050.0 779 66.5
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 4.6e-304 1047.7 776 67.5
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 6.8e-300 1033.9 815 67.5
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 6.0e-296 1020.8 814 65.6
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 1.6e-293 1012.7 748 69.4
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 6.0e-288 994.2 782 64.1
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 8.7e-287 990.3 768 64.3
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 7.3e-286 987.3 800 63.8
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 9.9e-283 976.9 603 76.8
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.4e-281 971.1 804 65.3
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 9.3e-281 970.3 744 65.6
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.3e-281 970.3 744 65.6
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 2.7e-280 968.8 787 63.8
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 8.7e-279 963.8 747 65.6
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 1.9e-278 962.6 694 71.3
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 2.5e-278 962.2 742 66.2
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 3.3e-278 961.8 726 65.8
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 7.3e-278 960.7 798 61.3
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 9.6e-278 960.3 791 65.0
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 2.8e-277 958.7 731 64.8
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 3.1e-276 955.3 793 61.3
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 3.1e-276 955.3 743 65.8
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.8e-275 951.0 794 64.0
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 5.8e-275 951.0 802 64.5
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 9.9e-275 950.3 730 65.1
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 1.3e-274 949.9 795 62.8
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.4e-273 945.7 794 63.9
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 7.1e-273 944.1 794 63.9
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 3.5e-272 941.8 667 69.0
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.0e-271 940.3 760 63.4
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 7.4e-270 934.1 731 66.1
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 9.0e-268 927.2 742 64.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 3.4e-267 925.2 736 66.2
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 6.0e-264 914.4 792 59.7
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.4e-260 902.5 790 60.4
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 5.8e-259 897.9 690 67.0
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.9e-258 895.6 604 72.8
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 2.9e-258 895.6 740 62.0
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 6.5e-258 894.4 791 60.1
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.1e-257 893.6 684 67.1
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 4.6e-256 888.3 739 64.5
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 7.9e-256 887.5 808 59.5
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.8e-255 886.3 690 65.4
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.8e-255 886.3 788 62.2
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 2.3e-255 885.9 735 62.7
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 8.7e-255 884.0 738 62.3
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 1.9e-254 882.9 753 60.4
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 1.6e-253 879.8 747 61.6
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 2.8e-253 879.0 734 62.0
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 2.4e-252 875.9 709 64.0
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 3.1e-252 875.5 750 61.3
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 6.9e-252 874.4 745 60.8
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 6.9e-252 874.4 788 59.3
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 9.0e-252 874.0 746 61.0
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 1.2e-251 873.6 540 73.3
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 2.0e-251 872.8 771 57.8
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 2.6e-251 872.5 757 61.0
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 1.7e-250 869.8 793 59.8
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 1.7e-250 869.8 731 61.0
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 3.8e-250 868.6 705 63.0
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.4e-249 866.7 791 59.7
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 4.2e-249 865.1 738 63.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 5.5e-249 864.8 738 60.7
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.4e-247 860.1 691 65.1
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 8.8e-247 857.4 694 62.4
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 7.4e-246 854.4 760 59.9
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 1.8e-244 849.7 546 70.7
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.2e-243 847.0 776 59.3
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 1.4e-241 840.1 767 60.4
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.9e-241 839.7 769 58.8
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 5.1e-239 831.6 689 63.4
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.6e-238 829.3 692 62.9
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 5.7e-238 828.2 804 55.2
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 1.3e-237 827.0 796 57.7
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.7e-237 826.6 824 55.2
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 2.1e-232 809.7 723 56.6
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.4e-228 797.0 821 53.8
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 1.1e-225 787.3 600 64.5
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 6.8e-223 778.1 759 55.3
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 4.8e-221 771.9 730 56.7
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 5.0e-210 735.3 685 57.8
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 8.0e-208 728.0 559 66.0
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 7.5e-206 721.5 553 69.4
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.3e-160 571.2 795 44.2
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 4.5e-158 562.8 463 58.7
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.4e-156 557.0 343 72.6
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 4.2e-156 556.2 569 49.2
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.4e-151 541.2 525 59.4
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 1.0e-146 525.0 377 65.3
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 1.6e-144 517.7 397 68.3
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 7.6e-142 508.8 485 56.5
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 6.7e-138 495.7 433 54.7
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.5e-126 456.4 264 76.1
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 7.2e-124 449.1 403 66.5
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 5.0e-109 399.8 346 54.6
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.9e-108 397.9 401 51.1
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 1.6e-91 341.7 520 45.6
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 3.0e-90 337.4 187 79.1
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 1.7e-88 331.6 196 75.0
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 2.8e-83 314.3 343 49.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 1.1e-66 259.2 182 65.4
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 3.1e-58 231.1 323 51.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.9e-32 144.1 109 62.4
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 3.2e-31 141.4 83 72.3
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-30 138.3 367 28.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.2e-19 102.1 77 61.0
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.4e-18 99.4 126 42.1
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.9e-16 91.7 72 51.4
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 6.3e-11 73.9 282 30.1
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 5.5e-07 60.8 105 39.0
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 3.6e-06 58.2 50 58.0


User provided reference genes

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