Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 5.0e-48 194.1 98 100.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.0e-20 102.4 92 52.2
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 4.5e-17 91.3 95 48.4
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.5e-17 91.3 95 53.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.9e-17 90.9 93 51.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.9e-17 90.9 96 51.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.7e-17 90.5 97 49.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.0e-16 90.1 95 48.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.0e-16 90.1 98 48.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.3e-16 89.7 92 46.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.9e-16 88.6 96 51.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.5e-16 87.4 92 44.6
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.5e-16 87.0 86 52.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.5e-15 86.3 104 45.2
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-15 86.3 91 52.7
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.5e-15 86.3 92 44.6
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.2e-15 84.7 93 48.4
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.2e-15 84.0 93 47.3
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 2.1e-14 82.4 96 45.8
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.7e-14 82.0 96 45.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.7e-14 82.0 96 45.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.0e-13 80.1 97 48.5
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-13 79.7 88 45.5
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.3e-13 79.0 92 42.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 2.3e-13 79.0 93 46.2
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.0e-13 78.6 95 44.2
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.0e-13 78.6 89 46.1
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.0e-13 78.6 100 44.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.0e-13 78.6 85 47.1
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.0e-13 78.6 92 43.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 4.0e-13 78.2 99 49.5
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 5.2e-13 77.8 92 41.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 5.2e-13 77.8 102 46.1
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 5.2e-13 77.8 86 47.7
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 5.2e-13 77.8 95 46.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 6.8e-13 77.4 95 44.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 8.8e-13 77.0 51 62.7
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 8.8e-13 77.0 92 40.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-12 76.6 92 42.4
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.2e-12 76.6 91 46.2
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-12 76.3 87 43.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.5e-12 76.3 95 45.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-12 76.3 86 47.7
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.0e-12 75.9 99 42.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-12 75.5 86 47.7
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.6e-12 75.5 85 44.7
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.6e-12 75.5 90 45.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.4e-12 75.1 86 47.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.4e-12 75.1 84 44.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.4e-12 75.1 92 41.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.4e-12 75.1 101 45.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.7e-12 74.3 86 46.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.8e-12 73.6 92 44.6
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.8e-12 73.6 101 43.6
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.7e-11 72.8 95 44.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.2e-11 72.4 95 48.4
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.7e-11 71.6 93 39.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 4.8e-11 71.2 95 45.3
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 4.8e-11 71.2 85 44.7
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.8e-11 71.2 95 43.2
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.8e-11 71.2 95 47.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.3e-11 70.9 94 44.7
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 6.3e-11 70.9 87 43.7
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 6.3e-11 70.9 47 68.1
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.3e-11 70.5 88 45.5
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 8.3e-11 70.5 91 42.9
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 8.3e-11 70.5 93 40.9
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 8.3e-11 70.5 87 43.7
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.3e-11 70.5 101 42.6
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.3e-11 70.5 96 45.8
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.1e-10 70.1 93 36.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-10 70.1 92 40.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-10 70.1 91 42.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.1e-10 70.1 51 60.8
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-10 69.7 92 40.2
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.8e-10 69.3 87 43.7
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.8e-10 69.3 87 43.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 40.2
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.8e-10 69.3 96 43.8
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.8e-10 69.3 97 47.4
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.4e-10 68.9 95 42.1
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.4e-10 68.9 98 41.8
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.4e-10 68.9 93 41.9
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-10 68.6 91 42.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.1e-10 68.6 68 48.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.1e-10 68.6 87 43.7
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.1e-10 68.2 91 41.8
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.1e-10 68.2 88 44.3
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 5.4e-10 67.8 93 40.9
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 5.4e-10 67.8 94 45.7
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.4e-10 67.8 84 45.2
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.0e-10 67.4 93 39.8
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 9.1e-10 67.0 77 49.4
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.1e-10 67.0 96 43.8
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.2e-09 66.6 86 43.0
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 91 42.9
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-09 66.6 87 48.3
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-09 66.6 97 38.1
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.6e-09 66.2 94 42.6
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-09 66.2 88 42.0
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-09 66.2 93 44.1
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.6e-09 66.2 34 76.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 3.5e-09 65.1 89 44.9
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.5e-09 65.1 84 42.9
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 3.5e-09 65.1 96 42.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 4.5e-09 64.7 39 64.1
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 4.5e-09 64.7 39 64.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 4.5e-09 64.7 96 41.7
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.9e-09 64.3 86 40.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.9e-09 64.3 91 42.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.9e-09 64.3 82 43.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 7.7e-09 63.9 89 40.4
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 7.7e-09 63.9 92 40.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 7.7e-09 63.9 95 41.1
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 7.7e-09 63.9 87 41.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 7.7e-09 63.9 92 37.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.7e-09 63.9 44 65.9
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 7.7e-09 63.9 79 45.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.0e-08 63.5 86 39.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.0e-08 63.5 85 42.4
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.0e-08 63.5 90 42.2
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.0e-08 63.5 83 42.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.0e-08 63.5 97 38.1
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.0e-08 63.5 71 43.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 99 40.4
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.7e-08 62.8 47 59.6
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 96 41.7
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 89 44.9
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.2e-08 62.4 77 46.8
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.2e-08 62.4 90 41.1
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 2.2e-08 62.4 88 40.9
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-08 62.4 92 35.9
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 38 63.2
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 47 57.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.9e-08 62.0 48 54.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.9e-08 62.0 81 43.2
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.8e-08 61.6 92 41.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.8e-08 61.6 46 60.9
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 5.0e-08 61.2 92 37.0
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.5e-08 60.8 90 40.0
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 6.5e-08 60.8 90 40.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.5e-08 60.8 86 40.7
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 8.5e-08 60.5 102 37.3
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.5e-08 60.5 78 46.2
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 89 42.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.5e-07 59.7 99 39.4
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.9e-07 59.3 57 49.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-07 58.9 95 36.8
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.2e-07 58.5 88 42.0
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.2e-07 58.2 92 37.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 5.5e-07 57.8 93 36.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 5.5e-07 57.8 93 36.6
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 5.5e-07 57.8 87 39.1
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.5e-07 57.8 46 52.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-07 57.4 35 68.6
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-07 57.4 95 38.9
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-07 57.4 95 38.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 9.4e-07 57.0 95 38.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-07 57.0 95 38.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 9.4e-07 57.0 92 38.0
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 93 37.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-06 56.6 93 37.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 42 57.1
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 42 57.1
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 1.6e-06 56.2 94 38.3
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 2.1e-06 55.8 106 38.7
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.1e-06 55.8 92 39.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.7e-06 55.5 91 36.3
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.7e-06 55.5 64 50.0
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 4.7e-06 54.7 35 65.7
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.7e-06 54.7 44 52.3
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 4.7e-06 54.7 93 37.6
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 6.1e-06 54.3 92 38.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 8.0e-06 53.9 92 38.0


User provided reference genes

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