Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 1.6e-157 559.3 274 100.0
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 8.6e-90 334.3 273 60.8
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 5.6e-81 305.1 269 58.4
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 9.2e-76 287.7 271 55.4
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 1.3e-74 283.9 266 53.4
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 3.0e-74 282.7 270 53.3
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 6.6e-74 281.6 270 52.2
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 4.3e-73 278.9 269 53.9
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 4.0e-71 272.3 275 52.0
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 1.2e-70 270.8 273 52.0
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 1.2e-70 270.8 275 53.1
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 2.0e-70 270.0 275 52.7
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 4.4e-70 268.9 275 50.5
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 4.4e-70 268.9 272 51.8
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 5.8e-70 268.5 275 53.5
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 2.9e-69 266.2 272 49.6
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 6.0e-67 258.5 273 49.8
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 7.8e-67 258.1 255 51.4
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 1.7e-66 256.9 245 55.5
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 1.7e-66 256.9 267 47.6
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 8.6e-66 254.6 272 48.9
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 1.1e-63 247.7 218 55.0
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 3.4e-62 242.7 277 48.0
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 4.1e-60 235.7 237 51.1
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 1.2e-59 234.2 277 46.6
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 3.5e-59 232.6 260 46.5
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 1.7e-58 230.3 271 43.5
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 9.6e-57 224.6 263 46.8
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 3.1e-55 219.5 266 48.1
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 1.2e-54 217.6 286 41.6
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 1.3e-53 214.2 275 45.8
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 2.2e-53 213.4 247 45.3
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 4.2e-52 209.1 225 51.1
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 1.0e-50 204.5 271 42.1
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 7.3e-49 198.4 280 43.6
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 4.2e-44 182.6 272 38.6
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 1.4e-39 167.5 278 39.6
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-38 164.1 174 54.6
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.9e-36 157.1 278 40.6
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 7.9e-35 151.8 268 36.6
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 7.4e-33 145.2 270 35.2
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 1.9e-28 130.6 102 56.9
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 2.1e-27 127.1 230 37.8
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.8e-26 124.0 121 46.3
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.3e-26 123.6 116 48.3
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 7.4e-25 118.6 92 54.3
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 7.4e-25 118.6 288 34.0
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 2.8e-24 116.7 101 55.4
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 2.8e-24 116.7 96 55.2
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 4.8e-24 115.9 278 33.8
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 1.4e-23 114.4 119 46.2
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 1.3e-21 107.8 93 51.6
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 3.2e-20 103.2 99 49.5
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 1.6e-19 100.9 102 50.0
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 3.9e-18 96.3 267 30.7
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 6.7e-18 95.5 70 60.0
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 5.7e-17 92.4 70 57.1
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 3.7e-16 89.7 147 37.4
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 2.2e-13 80.5 244 25.8
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 2.2e-13 80.5 244 25.8
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 2.2e-13 80.5 244 25.8
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 5.0e-13 79.3 244 25.4
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 5.0e-13 79.3 244 25.4
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.9e-12 77.4 61 57.4
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla HOM05D002950 ORTHO05D009601 2.5e-12 77.0 255 29.4
Glyma.07G233600 Glycine max HOM05D002950 ORTHO05D009601 3.2e-12 76.6 254 28.0
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 7.2e-12 75.5 251 27.1
CAN.G756.8 Capsicum annuum HOM05D002950 ORTHO05D009601 2.1e-11 73.9 247 28.3
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 2.1e-11 73.9 222 28.4
Glyma.17G038600 Glycine max HOM05D002950 ORTHO05D009601 2.7e-11 73.6 264 26.9
Solyc01g088500.3 Solanum lycopersicum HOM05D002950 ORTHO05D009601 3.6e-11 73.2 246 28.0
Sopen01g035360 Solanum pennellii HOM05D002950 ORTHO05D009601 3.6e-11 73.2 246 28.0
Atru.chr4.3124 Acer truncatum HOM05D002950 ORTHO05D009601 4.7e-11 72.8 291 26.1
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 6.1e-11 72.4 73 46.6
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 6.1e-11 72.4 250 28.8
Lj4g0024176 Lotus japonicus HOM05D002950 ORTHO05D009601 7.9e-11 72.0 254 27.2
Lalb_Chr12g0200711 Lupinus albus HOM05D002950 ORTHO05D009601 1.0e-10 71.6 279 25.8
arahy.Tifrunner.gnm1.ann1.S2XP9D Arachis hypogaea HOM05D002950 ORTHO05D009601 1.4e-10 71.2 291 27.8
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 1.4e-10 71.2 265 27.5
Phvul.003G119500 Phaseolus vulgaris HOM05D002950 ORTHO05D009601 1.8e-10 70.9 256 27.0
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 2.3e-10 70.5 70 40.0
Psat0ss1196g0560 Pisum sativum HOM05D002950 ORTHO05D009601 2.3e-10 70.5 282 24.5
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 3.0e-10 70.1 50 52.0
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 3.0e-10 70.1 50 52.0
ClCG05G006810 Citrullus lanatus HOM05D002950 ORTHO05D009601 5.1e-10 69.3 261 26.4
CsaV3_3G015460 Cucumis sativus L. HOM05D002950 ORTHO05D009601 5.1e-10 69.3 256 27.7
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 5.1e-10 69.3 49 55.1
TPR.G12622 Trifolium pratense HOM05D002950 ORTHO05D009601 5.1e-10 69.3 233 26.6
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 6.7e-10 68.9 57 43.9
CiPaw.02G071200 Carya illinoinensis HOM05D002950 ORTHO05D009601 6.7e-10 68.9 257 27.6
DCAR_023384 Daucus carota HOM05D002950 ORTHO05D009601 6.7e-10 68.9 263 26.6
QL06p013758 Quercus lobata HOM05D002950 ORTHO05D009601 6.7e-10 68.9 251 26.3
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 8.8e-10 68.6 49 51.0
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 1.5e-09 67.8 62 48.4
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 2.0e-09 67.4 271 27.7
SEGI_12346 Sequoiadendron giganteum HOM05D002950 ORTHO05D010092 2.0e-09 67.4 250 27.2
CSS0018037 Camellia sinensis var. sinensis HOM05D002950 ORTHO05D009601 2.6e-09 67.0 259 28.2
VMungo1215G2080 Vigna mungo HOM05D002950 ORTHO05D009601 5.7e-09 65.9 258 26.0
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 7.4e-09 65.5 72 36.1
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 9.7e-09 65.1 290 25.9
Cfa015715 Carpinus fangiana HOM05D002950 ORTHO05D009601 1.3e-08 64.7 255 25.5
Dinv29530 Davidia involucrata HOM05D002950 ORTHO05D009601 1.3e-08 64.7 243 25.1
Cc03_g00300 Coffea canephora HOM05D002950 ORTHO05D009601 1.7e-08 64.3 231 26.0
FvH4_4g21130 Fragaria vesca HOM05D002950 ORTHO05D009601 3.7e-08 63.2 292 25.0
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 4.8e-08 62.8 70 40.0
Medtr4g123700 Medicago truncatula HOM05D002950 ORTHO05D009601 4.8e-08 62.8 222 24.8
arahy.Tifrunner.gnm1.ann1.IY3TI3 Arachis hypogaea HOM05D002950 ORTHO05D009601 6.3e-08 62.4 290 26.9
ATR0796G185 Amborella trichopoda HOM05D002950 ORTHO05D009601 8.2e-08 62.0 251 27.5
Haze_00799 Corylus avellana HOM05D002950 ORTHO05D009601 8.2e-08 62.0 255 25.5
MELO3C031621.2 Cucumis melo HOM05D002950 ORTHO05D009601 8.2e-08 62.0 234 26.9
Ciclev10005553m.g Citrus clementina HOM05D002950 ORTHO05D009601 1.1e-07 61.6 254 26.4
Oeu022694.1 Olea europaea HOM05D002950 ORTHO05D009601 1.1e-07 61.6 223 28.3
PSO210G4875 Papaver somniferum HOM05D002950 ORTHO05D009601 1.8e-07 60.8 247 25.1
PSO761G0183 Papaver somniferum HOM05D002950 ORTHO05D009601 1.8e-07 60.8 247 25.1
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 1.8e-07 60.8 230 25.7
C05p49040 Brassica napus HOM05D002950 ORTHO05D009601 3.1e-07 60.1 247 25.1
vmacro07994 Vaccinium macrocarpon HOM05D002950 ORTHO05D009601 3.1e-07 60.1 242 25.6
FAN17G2745 Fragaria x ananassa HOM05D002950 ORTHO05D009601 4.1e-07 59.7 291 24.7
Lsat_1_v5_gn_1_40601 Lactuca sativa HOM05D002950 ORTHO05D009601 5.3e-07 59.3 236 27.5
MBI18_g28903_MAGBIO Magnolia biondii HOM05D002950 ORTHO05D009601 5.3e-07 59.3 268 26.1
BolC5t33644H Brassica oleracea HOM05D002950 ORTHO05D009601 6.9e-07 58.9 229 25.8
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 6.9e-07 58.9 243 25.9
MD11G1158400 Malus domestica HOM05D007994 ORTHO05D010092 6.9e-07 58.9 82 43.9
Rhsim04G0246700 Rhododendron simsii HOM05D002950 ORTHO05D009601 9.1e-07 58.5 242 24.8
FAN07G1569 Fragaria x ananassa HOM05D002950 ORTHO05D009601 1.2e-06 58.2 291 24.4
TAR365G0202 Trochodendron aralioides HOM05D002950 ORTHO05D009601 1.2e-06 58.2 223 27.4
COL.COLO4_34541 Corchorus olitorius HOM05D000108 ORTHO05D001378 2.6e-06 57.0 242 23.6
Thecc.04G310000 Theobroma cacao HOM05D002950 ORTHO05D009601 2.6e-06 57.0 286 22.7
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 3.4e-06 56.6 49 42.9


User provided reference genes

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