Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09710 Coffea canephora HOM05D006912 ORTHO05D008686 2.1e-25 118.2 60 100.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 3.3e-18 94.4 87 63.2
Cc02_g06140 Coffea canephora HOM05D006912 ORTHO05D008686 2.5e-10 68.2 68 57.4
SalBow3G1191 Salvia bowleyana HOM05D006912 ORTHO05D008686 1.6e-09 65.5 68 54.4
Peaxi162Scf00284g00626 Petunia axillaris HOM05D006912 ORTHO05D008686 2.8e-09 64.7 67 53.7
CAN.G19.13 Capsicum annuum HOM05D006912 ORTHO05D008686 3.6e-09 64.3 69 52.2
QL08p063574 Quercus lobata HOM05D006912 ORTHO05D008686 8.1e-09 63.2 68 52.9
Solyc06g051040.4 Solanum lycopersicum HOM05D006912 ORTHO05D008686 8.1e-09 63.2 69 52.2
Sopen06g016870 Solanum pennellii HOM05D006912 ORTHO05D008686 8.1e-09 63.2 69 52.2
CiPaw.02G194800 Carya illinoinensis HOM05D006912 ORTHO05D008686 1.1e-08 62.8 68 52.9
Haze_17259 Corylus avellana HOM05D006912 ORTHO05D008686 1.1e-08 62.8 68 52.9
Eucgr.I01149 Eucalyptus grandis HOM05D006912 ORTHO05D008686 1.1e-08 62.8 68 52.9
Dinv10596 Davidia involucrata HOM05D006912 ORTHO05D008686 1.4e-08 62.4 68 52.9
Atru.chr12.81 Acer truncatum HOM05D006912 ORTHO05D008686 1.8e-08 62.0 69 50.7
SGA_v2.0_scaffold44G16664 Striga asiatica HOM05D006912 ORTHO05D008686 1.8e-08 62.0 68 52.9
Cpa.g.sc19.145 Carica papaya HOM05D006912 ORTHO05D008686 2.3e-08 61.6 68 51.5
Cfa001289 Carpinus fangiana HOM05D006912 ORTHO05D008686 2.3e-08 61.6 68 51.5
Hma1.2p1_3227F.1_g334230 Hydrangea macrophylla HOM05D006912 ORTHO05D008686 2.3e-08 61.6 69 49.3
Manes.10G009800 Manihot esculenta HOM05D006912 ORTHO05D008686 2.3e-08 61.6 68 51.5
GSVIVG01032774001 Vitis vinifera HOM05D006912 ORTHO05D008686 2.3e-08 61.6 68 50.0
Ciclev10031128m.g Citrus clementina HOM05D006912 ORTHO05D008686 3.1e-08 61.2 68 50.0
CsaV3_3G031030 Cucumis sativus L. HOM05D006912 ORTHO05D008686 3.1e-08 61.2 69 50.7
Migut.F00655 Erythranthe guttata HOM05D006912 ORTHO05D008686 3.1e-08 61.2 68 51.5
TWI73G0876 Tripterygium wilfordii HOM05D006912 ORTHO05D008686 3.1e-08 61.2 68 51.5
Prupe.2G254200 Prunus persica HOM05D006912 ORTHO05D008686 4.0e-08 60.8 69 50.7
Actinidia29714 Actinidia chinensis HOM05D006912 ORTHO05D008686 6.8e-08 60.1 68 48.5
MELO3C022702.2 Cucumis melo HOM05D006912 ORTHO05D008686 6.8e-08 60.1 69 49.3
Nn2g10954 Nelumbo nucifera HOM05D006912 ORTHO05D008686 6.8e-08 60.1 68 48.5
Nitab4.5_0000058g0210 Nicotiana tabacum HOM05D006912 ORTHO05D008686 6.8e-08 60.1 68 50.0
Nitab4.5_0000666g0110 Nicotiana tabacum HOM05D006912 ORTHO05D008686 6.8e-08 60.1 68 50.0
Rhsim03G0145700 Rhododendron simsii HOM05D006912 ORTHO05D008686 6.8e-08 60.1 68 48.5
Sed0020220 Sechium edule HOM05D006912 ORTHO05D008686 6.8e-08 60.1 69 49.3
vmacro06954 Vaccinium macrocarpon HOM05D006912 ORTHO05D008686 6.8e-08 60.1 69 49.3
vmacro17695 Vaccinium macrocarpon HOM05D006912 ORTHO05D008686 6.8e-08 60.1 69 49.3
EL10Ac2g04877 Beta vulgaris HOM05D006912 ORTHO05D008686 8.9e-08 59.7 69 49.3
AUR62012285 Chenopodium quinoa HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 48.5
AUR62022926 Chenopodium quinoa HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 48.5
DCAR_011835 Daucus carota HOM05D006912 ORTHO05D008686 8.9e-08 59.7 79 43.0
Duzib106G1329 Durio zibethinus HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 50.0
Gohir.A05G331300 Gossypium hirsutum HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 50.0
Gohir.D04G069900 Gossypium hirsutum HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 50.0
Gorai.012G078400 Gossypium raimondii HOM05D006912 ORTHO05D008686 8.9e-08 59.7 68 50.0
CSS0033429 Camellia sinensis var. sinensis HOM05D006912 ORTHO05D008686 1.2e-07 59.3 68 48.5
COL.COLO4_25531 Corchorus olitorius HOM05D006912 ORTHO05D008686 1.2e-07 59.3 68 50.0
Lj1A959T84 Lonicera japonica HOM05D006912 ORTHO05D008686 1.2e-07 59.3 67 50.7
MD07G1225400 Malus domestica HOM05D006912 ORTHO05D008686 1.2e-07 59.3 68 50.0
Thecc.10G012400 Theobroma cacao HOM05D006912 ORTHO05D008686 1.2e-07 59.3 68 50.0
Potri.008G071900 Populus trichocarpa HOM05D006912 ORTHO05D008686 1.5e-07 58.9 68 51.5
PGR044G2446 Punica granatum HOM05D006912 ORTHO05D008686 2.0e-07 58.5 76 46.1
Aa31LG11G6590 Aethionema arabicum HOM05D006912 ORTHO05D008686 2.6e-07 58.2 70 48.6
CANSAT56G1077 Cannabis sativa HOM05D006912 ORTHO05D008686 2.6e-07 58.2 68 48.5
ClCG10G008640 Citrullus lanatus HOM05D006912 ORTHO05D008686 2.6e-07 58.2 69 47.8
CDE04G3666 Ceratophyllum demersum HOM05D006912 ORTHO05D008686 4.4e-07 57.4 70 44.3
Lalb_Chr11g0075041 Lupinus albus HOM05D006912 ORTHO05D008686 4.4e-07 57.4 68 47.1
MD01G1156700 Malus domestica HOM05D006912 ORTHO05D008686 5.8e-07 57.0 68 48.5
TAR636G1205 Trochodendron aralioides HOM05D006912 ORTHO05D008686 5.8e-07 57.0 68 47.1
Ca_15146_v3 Cicer arietinum L. HOM05D006912 ORTHO05D008686 7.6e-07 56.6 77 42.9
Lsat_1_v5_gn_2_124280 Lactuca sativa HOM05D006912 ORTHO05D008686 9.9e-07 56.2 67 47.8
Psat5g130320 Pisum sativum HOM05D006912 ORTHO05D008686 9.9e-07 56.2 77 42.9
CARHR207760 Cardamine hirsuta HOM05D006912 ORTHO05D008686 1.3e-06 55.8 68 47.1
TAR623G0246 Trochodendron aralioides HOM05D006912 ORTHO05D008686 1.3e-06 55.8 68 45.6
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.2e-06 55.1 69 46.4
Glyma.11G232000 Glycine max HOM05D006912 ORTHO05D008686 2.2e-06 55.1 68 44.1
Sc10g0002530 Simmondsia chinensis HOM05D006912 ORTHO05D008686 2.2e-06 55.1 68 47.1
AL6G15400 Arabidopsis lyrata HOM05D006912 ORTHO05D008686 3.7e-06 54.3 68 45.6
Carub.0006s0441 Capsella rubella HOM05D006912 ORTHO05D008686 3.7e-06 54.3 68 45.6
Phvul.001G245100 Phaseolus vulgaris HOM05D006912 ORTHO05D008686 3.7e-06 54.3 68 42.6
Sabra15G0066700 Salix brachista HOM05D006912 ORTHO05D008686 3.7e-06 54.3 68 47.1
Hund13884 Selenicereus undatus HOM05D006912 ORTHO05D008686 3.7e-06 54.3 68 44.1
AT5G05510 Arabidopsis thaliana HOM05D006912 ORTHO05D008686 4.9e-06 53.9 68 45.6
Sp6g37340 Schrenkiella parvula HOM05D006912 ORTHO05D008686 4.9e-06 53.9 68 45.6
FAN03G1846 Fragaria x ananassa HOM05D006912 ORTHO05D008686 6.4e-06 53.5 67 46.3
Glyma.18G025300 Glycine max HOM05D006912 ORTHO05D008686 6.4e-06 53.5 68 45.6
HanXRQChr14g0459411 Helianthus annuus HOM05D006912 ORTHO05D008686 6.4e-06 53.5 67 44.8
Medtr3g071460 Medicago truncatula HOM05D006912 ORTHO05D008686 6.4e-06 53.5 68 44.1
RcHm_v2.0_Chr1g0370781 Rosa chinensis HOM05D006912 ORTHO05D008686 6.4e-06 53.5 67 47.8
TPR.G30153 Trifolium pratense HOM05D006912 ORTHO05D008686 6.4e-06 53.5 77 40.3
Ah.10g036300 Amaranthus hybridus HOM05D006912 ORTHO05D008686 8.4e-06 53.1 68 44.1
Potri.010G185500 Populus trichocarpa HOM05D006912 ORTHO05D008686 8.4e-06 53.1 68 48.5
THA.LOC104816536 Tarenaya hassleriana HOM05D006912 ORTHO05D008686 8.4e-06 53.1 68 44.1


User provided reference genes

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