Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09690 Coffea canephora HOM05D002225 ORTHO05D002271 6.2e-79 297.4 147 100.0
Cc01_g13630 Coffea canephora HOM05D002225 ORTHO05D002271 3.6e-58 228.4 147 81.0
Cc08_g10240 Coffea canephora HOM05D002225 ORTHO05D002271 1.9e-51 206.1 138 79.0
Dinv26526 Davidia involucrata HOM05D002225 ORTHO05D002271 5.3e-46 188.0 147 66.7
Sopen04g004460 Solanum pennellii HOM05D002225 ORTHO05D002271 7.7e-45 184.1 147 66.0
PGSC0003DMG400032542 Solanum tuberosum HOM05D002225 ORTHO05D002271 7.7e-45 184.1 147 66.0
Nitab4.5_0007261g0040 Nicotiana tabacum HOM05D002225 ORTHO05D002271 1.0e-44 183.7 147 66.7
Peaxi162Scf00760g00022 Petunia axillaris HOM05D002225 ORTHO05D002271 1.7e-44 183.0 147 68.0
Nitab4.5_0002113g0120 Nicotiana tabacum HOM05D002225 ORTHO05D002271 2.9e-44 182.2 147 66.7
Lj6A722G88 Lonicera japonica HOM05D002225 ORTHO05D002271 5.0e-44 181.4 148 65.5
Manes.03G080700 Manihot esculenta HOM05D002225 ORTHO05D002271 5.0e-44 181.4 147 64.6
CAN.G624.21 Capsicum annuum HOM05D002225 ORTHO05D002271 8.5e-44 180.6 147 65.3
FAN12G1732 Fragaria x ananassa HOM05D002225 ORTHO05D002271 1.9e-43 179.5 147 63.3
Solyc04g009340.3 Solanum lycopersicum HOM05D002225 ORTHO05D002271 1.9e-43 179.5 147 64.6
COL.COLO4_16616 Corchorus olitorius HOM05D002225 ORTHO05D002271 2.5e-43 179.1 147 62.6
MD13G1008400 Malus domestica HOM05D002225 ORTHO05D002271 2.5e-43 179.1 148 62.8
RcHm_v2.0_Chr4g0446381 Rosa chinensis HOM05D002225 ORTHO05D002271 3.2e-43 178.7 147 63.3
Thecc.02G295200 Theobroma cacao HOM05D002225 ORTHO05D002271 3.2e-43 178.7 147 62.6
FvH4_4g36670 Fragaria vesca HOM05D002225 ORTHO05D002271 4.2e-43 178.3 147 63.3
FAN07G1200 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.2e-43 178.3 147 63.3
FAN17G0793 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.2e-43 178.3 147 63.3
Prupe.1G344700 Prunus persica HOM05D002225 ORTHO05D002271 4.2e-43 178.3 147 63.3
CSS0033303 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 7.2e-43 177.6 147 63.9
MD16G1005900 Malus domestica HOM05D002225 ORTHO05D002271 7.2e-43 177.6 147 62.6
arahy.Tifrunner.gnm1.ann1.RAZH9U Arachis hypogaea HOM05D002225 ORTHO05D002271 9.4e-43 177.2 147 63.9
arahy.Tifrunner.gnm1.ann1.X31W74 Arachis hypogaea HOM05D002225 ORTHO05D002271 9.4e-43 177.2 147 63.9
CiPaw.05G167700 Carya illinoinensis HOM05D002225 ORTHO05D002271 9.4e-43 177.2 147 64.6
TWI53G1061 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.2e-42 176.8 147 63.3
Sabra08G0063400 Salix brachista HOM05D002225 ORTHO05D002271 1.6e-42 176.4 147 62.6
MBI03_g05110_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 2.7e-42 175.6 149 62.4
Oeu044074.1 Olea europaea HOM05D002225 ORTHO05D002271 3.6e-42 175.3 147 63.3
GSVIVG01010189001 Vitis vinifera HOM05D002225 ORTHO05D002271 3.6e-42 175.3 147 64.6
Duzib268G1460 Durio zibethinus HOM05D002225 ORTHO05D002271 6.1e-42 174.5 147 60.5
Psat7g174200 Pisum sativum HOM05D002225 ORTHO05D002271 8.0e-42 174.1 147 62.6
Potri.008G085700 Populus trichocarpa HOM05D002225 ORTHO05D002271 8.0e-42 174.1 147 62.6
Cfa008724 Carpinus fangiana HOM05D002225 ORTHO05D002271 1.4e-41 173.3 147 62.6
TWI74G0237 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.8e-41 172.9 147 61.9
CANSAT64G1256 Cannabis sativa HOM05D002225 ORTHO05D002271 2.3e-41 172.6 147 61.2
Glyma.12G028900 Glycine max HOM05D002225 ORTHO05D002271 2.3e-41 172.6 147 61.2
Sabra10G0130600 Salix brachista HOM05D002225 ORTHO05D002271 2.3e-41 172.6 147 62.6
Gohir.D01G138600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 3.9e-41 171.8 147 59.2
Gorai.002G167300 Gossypium raimondii HOM05D002225 ORTHO05D002271 3.9e-41 171.8 147 59.2
TPR.G21565 Trifolium pratense HOM05D002225 ORTHO05D002271 5.2e-41 171.4 147 61.2
Actinidia04313 Actinidia chinensis HOM05D002225 ORTHO05D002271 6.7e-41 171.0 147 63.3
ECA234G4283 Erigeron canadensis HOM05D002225 ORTHO05D002271 6.7e-41 171.0 146 60.3
Rhsim09G0072600 Rhododendron simsii HOM05D002225 ORTHO05D002271 6.7e-41 171.0 147 62.6
Ciclev10031032m.g Citrus clementina HOM05D002225 ORTHO05D002271 8.8e-41 170.6 150 62.0
Glyma.11G104000 Glycine max HOM05D002225 ORTHO05D002271 8.8e-41 170.6 150 60.0
Lalb_Chr19g0139291 Lupinus albus HOM05D002225 ORTHO05D002271 8.8e-41 170.6 147 61.2
Potri.010G171100 Populus trichocarpa HOM05D002225 ORTHO05D002271 8.8e-41 170.6 147 60.5
TAR629G0799 Trochodendron aralioides HOM05D002225 ORTHO05D002271 1.1e-40 170.2 147 60.5
Haze_11735 Corylus avellana HOM05D002225 ORTHO05D002271 1.5e-40 169.9 147 61.2
vmacro16008 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 1.5e-40 169.9 147 61.9
Atru.BG.278.p Acer truncatum HOM05D002225 ORTHO05D002271 2.0e-40 169.5 147 63.3
Phvul.011G032200 Phaseolus vulgaris HOM05D002225 ORTHO05D002271 2.0e-40 169.5 147 59.9
VMungo1127G1685 Vigna mungo HOM05D002225 ORTHO05D002271 2.0e-40 169.5 147 59.9
Hma1.2p1_0285F.1_g113930 Hydrangea macrophylla HOM05D002225 ORTHO05D002271 2.6e-40 169.1 147 62.6
Medtr4g074220 Medicago truncatula HOM05D002225 ORTHO05D002271 4.4e-40 168.3 147 60.5
Duzib248G1623 Durio zibethinus HOM05D002225 ORTHO05D002271 7.4e-40 167.5 147 59.9
PGR044G0003 Punica granatum HOM05D002225 ORTHO05D002271 7.4e-40 167.5 147 59.9
Nn4g24911 Nelumbo nucifera HOM05D002225 ORTHO05D002271 9.7e-40 167.2 147 61.2
Gohir.A01G146100 Gossypium hirsutum HOM05D002225 ORTHO05D002271 1.7e-39 166.4 162 54.3
PSO782G2120 Papaver somniferum HOM05D002225 ORTHO05D002271 2.2e-39 166.0 146 61.6
ATR0618G231 Amborella trichopoda HOM05D002225 ORTHO05D002271 2.8e-39 165.6 147 60.5
Cc00_g16680 Coffea canephora HOM05D002225 ORTHO05D002271 2.8e-39 165.6 99 81.8
DCAR_026916 Daucus carota HOM05D002225 ORTHO05D002271 4.8e-39 164.9 147 58.5
Ca_03041_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 6.3e-39 164.5 147 60.5
PSO063G0669 Papaver somniferum HOM05D002225 ORTHO05D002271 6.3e-39 164.5 146 61.6
Aqoxy3G04242 Aquilegia oxysepala HOM05D002225 ORTHO05D002271 8.2e-39 164.1 147 62.6
EL10Ac9g22904 Beta vulgaris HOM05D002225 ORTHO05D002271 1.4e-38 163.3 147 60.5
Cc06_g20730 Coffea canephora HOM05D002225 ORTHO05D002271 1.4e-38 163.3 91 85.7
Cc10_g11780 Coffea canephora HOM05D002225 ORTHO05D002271 1.8e-38 162.9 126 71.4
Hund24314 Selenicereus undatus HOM05D002225 ORTHO05D002271 3.1e-38 162.2 147 57.8
AUR62012862 Chenopodium quinoa HOM05D002225 ORTHO05D002271 4.1e-38 161.8 147 59.9
AUR62017648 Chenopodium quinoa HOM05D002225 ORTHO05D002271 9.1e-38 160.6 147 59.2
HanXRQChr01g0028531 Helianthus annuus HOM05D002225 ORTHO05D002271 1.2e-37 160.2 146 58.9
Lj3g0008787 Lotus japonicus HOM05D002225 ORTHO05D002271 2.6e-37 159.1 142 59.2
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 4.5e-37 158.3 147 58.5
ClCG11G001120 Citrullus lanatus HOM05D002225 ORTHO05D002271 5.9e-37 157.9 148 59.5
SalBow2G1711 Salvia bowleyana HOM05D002225 ORTHO05D002271 5.9e-37 157.9 151 59.6
MELO3C020035.2 Cucumis melo HOM05D002225 ORTHO05D002271 7.7e-37 157.5 148 60.1
CsaV3_5G013170 Cucumis sativus L. HOM05D002225 ORTHO05D002271 7.7e-37 157.5 148 60.1
Aa31LG8G6750 Aethionema arabicum HOM05D002225 ORTHO05D002271 1.0e-36 157.1 147 57.1
Eucgr.J00840 Eucalyptus grandis HOM05D002225 ORTHO05D002271 2.9e-36 155.6 146 58.9
CARHR095420 Cardamine hirsuta HOM05D002225 ORTHO05D002271 3.8e-36 155.2 147 56.5
Sp3g17900 Schrenkiella parvula HOM05D002225 ORTHO05D002271 3.8e-36 155.2 147 54.4
SEGI_40865 Sequoiadendron giganteum HOM05D002225 ORTHO05D002271 3.8e-36 155.2 145 58.6
Migut.L00850 Erythranthe guttata HOM05D002225 ORTHO05D002271 5.0e-36 154.8 147 57.8
AL3G33450 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 8.5e-36 154.1 147 55.1
Thhalv10020435m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 8.5e-36 154.1 147 54.4
Migut.L00855 Erythranthe guttata HOM05D002225 ORTHO05D002271 1.1e-35 153.7 147 57.1
Thhalv10023509m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 1.1e-35 153.7 147 55.1
Ah.01g013070 Amaranthus hybridus HOM05D002225 ORTHO05D002271 1.5e-35 153.3 149 57.0
SGA_v2.0_scaffold258G45747 Striga asiatica HOM05D002225 ORTHO05D002271 3.2e-35 152.1 150 58.7
AT3G19895 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 4.2e-35 151.8 147 54.4
CDE05G2843 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 4.2e-35 151.8 147 56.5
AUR62034079 Chenopodium quinoa HOM05D002225 ORTHO05D002271 5.5e-35 151.4 147 57.1
A01p34860 Brassica napus HOM05D002225 ORTHO05D002271 7.2e-35 151.0 143 54.5
BcaC09g48946 Brassica carinata HOM05D002225 ORTHO05D002271 1.2e-34 150.2 144 53.5
C01p44260 Brassica napus HOM05D002225 ORTHO05D002271 1.6e-34 149.8 143 53.8
BolC1t04386H Brassica oleracea HOM05D002225 ORTHO05D002271 1.6e-34 149.8 143 53.8
BraA01t03569Z Brassica rapa HOM05D002225 ORTHO05D002271 2.7e-34 149.1 143 53.8
Sed0022813 Sechium edule HOM05D002225 ORTHO05D002271 2.7e-34 149.1 150 57.3
THA.LOC104809148 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 2.7e-34 149.1 147 55.1
Carub.0003s1979 Capsella rubella HOM05D002225 ORTHO05D002271 4.7e-34 148.3 147 55.1
Cc03_g14700 Coffea canephora HOM05D002225 ORTHO05D002271 6.7e-33 144.4 129 65.9
THA.LOC104826520 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 2.4e-30 136.0 148 53.4
Cc00_g24990 Coffea canephora HOM05D002225 ORTHO05D002271 1.2e-29 133.7 97 71.1
COL.COLO4_02877 Corchorus olitorius HOM05D002225 ORTHO05D002271 1.0e-28 130.6 120 57.5
Lsat_1_v5_gn_4_26401 Lactuca sativa HOM05D002225 ORTHO05D002271 1.3e-28 130.2 146 52.7
Sc10g0006830 Simmondsia chinensis HOM05D002225 ORTHO05D002271 6.1e-26 121.3 128 53.1
Mapoly0105s0037 Marchantia polymorpha HOM05D002225 ORTHO05D002271 6.8e-25 117.9 150 45.3
Glyma.12G159000 Glycine max HOM05D002225 ORTHO05D035072 8.8e-25 117.5 83 67.5
Cc00_g29800 Coffea canephora HOM05D002225 ORTHO05D002271 2.6e-24 115.9 114 60.5
Zm00001eb259400 Zea mays HOM05D002225 ORTHO05D002271 3.5e-21 105.5 143 42.0
Lsat_1_v5_gn_4_175760 Lactuca sativa HOM05D002225 ORTHO05D002271 5.0e-20 101.7 84 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1356 Anthoceros agrestis HOM05D002225 ORTHO05D002271 5.5e-19 98.2 148 41.2
Pp3c11_2010 Physcomitrium patens HOM05D002225 ORTHO05D002271 4.7e-18 95.1 152 42.1
unitig_22.g6362 Utricularia gibba HOM05D002225 ORTHO05D002271 8.0e-18 94.4 143 44.1
Pp3c2_29300 Physcomitrium patens HOM05D002225 ORTHO05D002271 3.0e-17 92.4 145 41.4
ATR0568G197 Amborella trichopoda HOM05D002225 ORTHO05D002271 5.7e-16 88.2 148 39.2
SMO228G0155 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 1.8e-14 83.2 150 42.0
Pp3c10_7420 Physcomitrium patens HOM05D001622 ORTHO05D007320 4.7e-10 68.6 173 31.2
Mapoly0052s0101 Marchantia polymorpha HOM05D001622 ORTHO05D007320 1.0e-09 67.4 153 30.7
HanXRQChr06g0183061 Helianthus annuus HOM05D001622 ORTHO05D007320 2.6e-08 62.8 152 31.6
PGSC0003DMG400008415 Solanum tuberosum HOM05D002225 ORTHO05D002271 2.6e-08 62.8 48 70.8
Gohir.A01G039300 Gossypium hirsutum HOM05D001622 ORTHO05D007320 4.4e-08 62.0 155 30.3
Pp3c14_8770 Physcomitrium patens HOM05D001622 ORTHO05D007320 4.4e-08 62.0 152 30.3
Gohir.D01G027000 Gossypium hirsutum HOM05D001622 ORTHO05D007320 5.8e-08 61.6 155 30.3
Gorai.002G036400 Gossypium raimondii HOM05D001622 ORTHO05D007320 5.8e-08 61.6 155 30.3
Aqoxy3G00134 Aquilegia oxysepala HOM05D001622 ORTHO05D007320 7.5e-08 61.2 157 31.2
Thhalv10022429m.g Eutrema salsugineum HOM05D001622 ORTHO05D007320 7.5e-08 61.2 151 31.1
Aa31LG8G160 Aethionema arabicum HOM05D001622 ORTHO05D007320 1.3e-07 60.5 151 30.5
CARHR087460 Cardamine hirsuta HOM05D001622 ORTHO05D007320 1.7e-07 60.1 151 29.8
MBI06_g27719_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 1.7e-07 60.1 45 64.4
Pp3c1_30960 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.7e-07 60.1 164 29.9
TWI38G0191 Tripterygium wilfordii HOM05D001622 ORTHO05D007320 1.7e-07 60.1 155 30.3
ATR0763G216 Amborella trichopoda HOM05D001622 ORTHO05D007320 2.9e-07 59.3 153 30.7
QL04p074444 Quercus lobata HOM05D002225 ORTHO05D002271 2.9e-07 59.3 46 67.4
Sp3g11080 Schrenkiella parvula HOM05D001622 ORTHO05D007320 2.9e-07 59.3 151 30.5
BolC5t34166H Brassica oleracea HOM05D001622 ORTHO05D007320 3.7e-07 58.9 151 32.5
Haze_08538 Corylus avellana HOM05D001622 ORTHO05D007320 3.7e-07 58.9 155 29.0
AL3G24620 Arabidopsis lyrata HOM05D001622 ORTHO05D007320 4.9e-07 58.5 151 30.5
A05p36550 Brassica napus HOM05D001622 ORTHO05D007320 4.9e-07 58.5 150 31.3
BraA05t22455Z Brassica rapa HOM05D001622 ORTHO05D007320 4.9e-07 58.5 150 31.3
DCAR_009640 Daucus carota HOM05D001622 ORTHO05D007320 4.9e-07 58.5 155 30.3
Gorai.007G335700 Gossypium raimondii HOM05D001622 ORTHO05D007320 4.9e-07 58.5 155 32.3
Duzib187G0458 Durio zibethinus HOM05D001622 ORTHO05D007320 6.4e-07 58.2 153 31.4
Thecc.07G152600 Theobroma cacao HOM05D001622 ORTHO05D007320 6.4e-07 58.2 155 30.3
Carub.0005s0925 Capsella rubella HOM05D001622 ORTHO05D007320 8.3e-07 57.8 151 29.8
Nitab4.5_0001080g0040 Nicotiana tabacum HOM05D001622 ORTHO05D007320 8.3e-07 57.8 142 31.7
Pp3c2_6360 Physcomitrium patens HOM05D001622 ORTHO05D007320 8.3e-07 57.8 170 29.4
BcaC05g29222 Brassica carinata HOM05D001622 ORTHO05D007320 1.1e-06 57.4 151 31.8
C05p54970 Brassica napus HOM05D001622 ORTHO05D007320 1.1e-06 57.4 151 31.8
Gohir.A11G291600 Gossypium hirsutum HOM05D001622 ORTHO05D007320 1.1e-06 57.4 155 32.3
Manes.06G171900 Manihot esculenta HOM05D001622 ORTHO05D007320 1.1e-06 57.4 155 30.3
Sc20g0002900 Simmondsia chinensis HOM05D001622 ORTHO05D007320 1.1e-06 57.4 155 29.7
arahy.Tifrunner.gnm1.ann1.WY48MC Arachis hypogaea HOM05D001622 ORTHO05D007320 1.4e-06 57.0 84 36.9
Duzib268G0553 Durio zibethinus HOM05D001622 ORTHO05D007320 1.4e-06 57.0 155 31.0
QL04p073268 Quercus lobata HOM05D001622 ORTHO05D007320 1.4e-06 57.0 155 29.7
AT3G12940 Arabidopsis thaliana HOM05D001622 ORTHO05D007320 1.9e-06 56.6 151 30.5
Migut.H01694 Erythranthe guttata HOM05D001622 ORTHO05D007320 1.9e-06 56.6 155 31.0
Atru.chr2.1758 Acer truncatum HOM05D001622 ORTHO05D007320 2.4e-06 56.2 155 29.7
CiPaw.12G005900 Carya illinoinensis HOM05D001622 ORTHO05D007320 2.4e-06 56.2 154 29.2
Duzib268G1161 Durio zibethinus HOM05D001622 ORTHO05D007320 2.4e-06 56.2 81 38.3
Solyc07g066450.4 Solanum lycopersicum HOM05D001622 ORTHO05D007320 3.2e-06 55.8 155 30.3
SGA_v2.0_scaffold713G53504 Striga asiatica HOM05D001622 ORTHO05D007320 3.2e-06 55.8 152 30.9
arahy.Tifrunner.gnm1.ann1.5TU0IR Arachis hypogaea HOM05D001622 ORTHO05D007320 4.1e-06 55.5 84 35.7
Ciclev10019785m.g Citrus clementina HOM05D001622 ORTHO05D007320 4.1e-06 55.5 167 29.3
Peaxi162Scf00452g00834 Petunia axillaris HOM05D001622 ORTHO05D007320 4.1e-06 55.5 155 29.0
AagrBONN_evm.TU.Sc2ySwM_369.297 Anthoceros agrestis HOM05D001622 ORTHO05D007320 5.4e-06 55.1 163 28.2
MELO3C026966.2 Cucumis melo HOM05D001622 ORTHO05D007320 5.4e-06 55.1 156 29.5
THA.LOC104815713 Tarenaya hassleriana HOM05D001622 ORTHO05D007320 5.4e-06 55.1 152 28.9
CsaV3_4G031890 Cucumis sativus L. HOM05D001622 ORTHO05D007320 7.0e-06 54.7 156 29.5
Sopen07g034630 Solanum pennellii HOM05D001622 ORTHO05D007320 7.0e-06 54.7 155 29.7
HPP92_001849 Vanilla planifolia HOM05D001622 ORTHO05D007320 7.0e-06 54.7 153 28.8
Manes.14G016300 Manihot esculenta HOM05D001622 ORTHO05D007320 9.2e-06 54.3 155 29.0
PGSC0003DMG400019002 Solanum tuberosum HOM05D002225 ORTHO05D002271 9.2e-06 54.3 52 51.9


User provided reference genes

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