Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 8.2e-91 337.0 169 100.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 6.5e-80 300.8 169 88.2
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.2e-79 298.5 169 87.6
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.2e-79 298.5 169 87.6
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.3e-77 292.4 169 84.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 8.8e-77 290.4 169 84.6
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 7.4e-76 287.3 169 85.2
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 7.4e-76 287.3 169 83.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 9.7e-76 287.0 168 86.3
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 2.8e-75 285.4 170 84.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.8e-75 285.4 169 83.4
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.7e-75 285.0 168 83.3
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.7e-75 285.0 168 83.3
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 4.8e-75 284.6 169 81.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.8e-75 284.6 173 83.8
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.8e-75 284.6 173 83.8
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.1e-74 283.5 172 83.1
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.4e-74 283.1 167 83.8
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.4e-74 283.1 173 81.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 3.1e-74 282.0 169 82.8
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.1e-74 281.6 172 82.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 4.1e-74 281.6 167 83.2
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 4.1e-74 281.6 173 81.5
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 4.1e-74 281.6 173 83.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 5.3e-74 281.2 169 83.4
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 6.9e-74 280.8 169 82.8
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 6.9e-74 280.8 169 82.8
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.0e-73 279.3 169 82.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.0e-73 279.3 169 83.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.5e-73 278.1 169 82.8
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.9e-73 277.7 172 80.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.9e-73 277.7 170 81.8
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.7e-72 276.2 172 79.7
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.7e-72 276.2 170 81.2
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.7e-72 276.2 171 79.5
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.2e-72 275.8 192 76.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.9e-72 275.4 169 82.2
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.9e-72 275.4 169 81.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 3.8e-72 275.0 174 78.2
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 5.0e-72 274.6 171 80.7
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 6.5e-72 274.2 156 87.2
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 6.5e-72 274.2 169 81.7
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.1e-71 273.5 171 79.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 169 81.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 169 81.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 169 81.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 5.5e-71 271.2 176 79.0
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.6e-70 269.6 177 76.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.6e-70 269.6 173 76.3
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.7e-70 268.9 156 86.5
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.6e-70 268.5 169 79.3
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.6e-70 268.5 171 78.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 4.7e-70 268.1 150 88.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 4.7e-70 268.1 150 86.7
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.0e-69 266.9 152 84.9
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.4e-69 266.5 169 78.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.4e-69 266.5 169 76.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.8e-69 266.2 167 78.4
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.8e-69 266.2 171 78.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.8e-69 266.2 171 78.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.3e-69 265.8 168 77.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.0e-69 265.4 172 78.5
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.9e-69 265.0 153 84.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.9e-69 265.0 175 76.0
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 5.1e-69 264.6 171 77.2
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 5.1e-69 264.6 181 74.6
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 8.8e-69 263.8 168 78.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.6e-68 262.3 153 82.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.6e-68 262.3 169 76.3
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.3e-68 261.9 156 80.8
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.4e-68 261.5 168 79.2
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 4.4e-68 261.5 168 79.2
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.3e-67 260.0 168 78.6
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.3e-67 260.0 168 78.6
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-67 259.6 169 75.7
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-67 259.2 167 76.6
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.2e-67 259.2 170 73.5
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.8e-67 258.8 150 83.3
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.8e-67 258.8 172 74.4
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.7e-67 258.5 152 83.6
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.8e-67 258.1 172 76.2
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 6.3e-67 257.7 167 76.6
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.3e-67 257.7 167 77.2
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 8.2e-67 257.3 152 82.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 3.1e-66 255.4 150 82.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.1e-66 255.4 150 82.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.1e-66 255.0 156 81.4
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 4.1e-66 255.0 172 74.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.2e-65 253.4 150 82.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-65 253.4 150 82.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.2e-65 253.4 172 73.3
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.5e-65 253.1 151 81.5
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 2.6e-65 252.3 152 80.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 4.5e-65 251.5 150 82.7
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 7.7e-65 250.8 164 73.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 2.9e-64 248.8 150 81.3
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 3.8e-64 248.4 137 90.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-64 247.7 137 89.8
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 6.5e-64 247.7 137 89.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 6.5e-64 247.7 167 73.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 6.5e-64 247.7 154 77.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-63 246.9 166 72.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.2e-63 244.2 137 87.6
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.4e-63 243.8 137 89.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.7e-62 242.3 159 78.0
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.6e-62 241.9 162 75.9
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 8.0e-62 240.7 138 84.8
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.0e-61 240.4 136 86.8
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-60 236.9 164 72.0
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.1e-60 236.9 137 83.2
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.6e-60 235.7 138 84.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.6e-60 235.7 140 85.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 9.7e-60 233.8 150 76.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.4e-58 229.2 148 76.4
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.1e-58 227.3 168 70.2
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.3e-56 223.4 169 71.0
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 7.2e-55 217.6 167 60.5
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 9.7e-52 207.2 130 82.3
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 4.8e-51 204.9 162 66.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-49 198.7 170 65.3
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 5.9e-49 198.0 109 90.8
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.5e-48 194.1 167 55.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.0e-45 187.2 108 84.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.8e-45 184.5 140 68.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.7e-43 179.9 109 85.3
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 4.8e-43 178.3 109 78.9
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.1e-42 174.1 126 69.8
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.3e-40 170.2 112 76.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.5e-39 166.8 149 55.7
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 8.3e-35 151.0 100 75.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 8.3e-35 151.0 127 63.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.6e-33 146.7 103 70.9
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.3e-32 142.9 187 48.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-31 139.4 69 94.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.0e-29 134.0 118 61.9
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.3e-29 132.9 82 79.3
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-28 130.2 69 88.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-28 129.8 108 63.9
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.9e-27 125.9 85 72.9
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.9e-27 125.9 63 92.1
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.4e-26 121.7 156 45.5
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.4e-26 121.7 69 85.5
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.6e-22 109.0 64 87.5
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.7e-19 99.0 112 54.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.0e-18 94.7 69 71.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.0e-16 90.9 66 71.2
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.8e-14 82.8 58 67.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.8e-14 82.8 44 86.4
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 6.2e-14 81.6 58 74.1


User provided reference genes

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