Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.6e-35 152.1 74 100.0
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.3e-27 125.9 69 84.1
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.6e-27 124.4 67 85.1
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 4.8e-27 124.0 69 84.1
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 4.8e-27 124.0 68 85.3
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 6.2e-27 123.6 68 80.9
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 6.2e-27 123.6 69 78.3
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.1e-26 122.9 69 81.2
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.1e-26 122.9 68 85.3
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.4e-26 122.5 69 81.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.4e-26 122.5 68 82.4
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.4e-26 122.5 68 85.3
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.4e-26 122.5 69 81.2
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 70 78.6
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 69 79.7
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.8e-26 122.1 70 80.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.1e-26 121.3 70 80.0
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 3.1e-26 121.3 70 80.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 4.0e-26 120.9 70 80.0
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 5.3e-26 120.6 69 78.3
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 9.0e-26 119.8 69 79.7
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.0e-26 119.8 69 78.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 9.0e-26 119.8 69 79.7
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.2e-25 119.4 68 79.4
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.5e-25 119.0 66 80.3
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 75.3
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.5e-25 119.0 69 78.3
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.5e-25 119.0 68 80.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 79.7
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 70 81.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 70 81.4
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 79.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.6e-25 118.2 71 77.5
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 76.8
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 76.8
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 76.8
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.6e-25 118.2 69 76.8
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.6e-25 118.2 70 78.6
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 75.4
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.4e-25 117.9 70 78.6
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 76.8
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 76.8
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 76.8
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 79.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 4.4e-25 117.5 66 81.8
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 4.4e-25 117.5 66 78.8
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.4e-25 117.5 66 78.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 4.4e-25 117.5 69 76.8
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 4.4e-25 117.5 69 78.3
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.8e-25 117.1 69 75.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.6e-25 116.7 69 79.7
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.6e-25 116.7 66 81.8
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 7.6e-25 116.7 69 76.8
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.6e-25 116.7 68 77.9
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.6e-25 116.7 66 78.8
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.6e-25 116.7 66 78.8
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.6e-25 116.7 68 77.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 9.9e-25 116.3 66 80.3
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 9.9e-25 116.3 66 80.3
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.3e-24 115.9 66 78.8
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.3e-24 115.9 66 81.8
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.7e-24 115.5 72 76.4
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.7e-24 115.5 69 76.8
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.7e-24 115.5 70 77.1
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.7e-24 115.5 69 75.4
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.7e-24 115.5 66 81.8
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.7e-24 115.5 70 74.3
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.2e-24 115.2 68 76.5
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.2e-24 115.2 69 76.8
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.2e-24 115.2 72 75.0
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.9e-24 114.8 66 77.3
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.8e-24 114.4 71 74.6
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.8e-24 114.4 71 74.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.8e-24 114.4 69 73.9
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-24 114.0 65 75.4
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-24 114.0 66 75.8
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.9e-24 114.0 69 73.9
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 4.9e-24 114.0 73 75.3
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 6.4e-24 113.6 66 78.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 8.4e-24 113.2 65 78.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.1e-23 112.8 69 73.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.1e-23 112.8 69 73.9
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 69 75.4
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-23 112.5 72 72.2
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.9e-23 112.1 70 75.7
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.9e-23 112.1 69 73.9
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.9e-23 112.1 66 78.8
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.9e-23 112.1 66 78.8
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 2.4e-23 111.7 66 77.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.4e-23 111.7 69 73.9
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 3.2e-23 111.3 66 81.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.2e-23 110.9 68 75.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 66 74.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 5.4e-23 110.5 93 62.4
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 5.4e-23 110.5 67 73.1
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 7.1e-23 110.2 66 74.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 7.1e-23 110.2 91 62.6
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.2e-22 109.4 69 71.0
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.2e-22 109.4 65 75.4
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.6e-22 109.0 63 77.8
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.6e-22 109.0 68 72.1
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.1e-22 108.6 68 70.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 73.5
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 73.5
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 73.5
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 73.5
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.7e-22 108.2 68 69.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.5e-22 107.8 66 78.8
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.5e-22 107.8 68 73.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.6e-22 107.5 99 58.6
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.0e-22 107.1 66 75.8
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.0e-21 106.3 62 75.8
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-21 105.9 97 54.6
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.7e-21 105.5 69 71.0
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.7e-21 105.5 68 70.6
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.7e-21 105.5 61 77.0
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.0e-21 104.8 68 67.6
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 3.9e-21 104.4 67 70.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.1e-21 104.0 66 69.7
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 5.1e-21 104.0 77 64.9
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 88 60.2
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.6e-20 100.5 76 67.1
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 7.3e-20 100.1 64 70.3
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.3e-20 100.1 61 73.8
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.3e-19 99.4 61 72.1
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.3e-19 99.4 62 74.2
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.8e-19 98.2 64 68.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.8e-19 98.2 64 70.3
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.6e-19 97.8 64 68.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 3.6e-19 97.8 64 68.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 3.6e-19 97.8 64 68.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 3.6e-19 97.8 64 68.8
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.6e-19 97.8 64 68.8
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 60 71.7
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.4e-18 95.9 54 79.6
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.4e-18 95.9 63 69.8
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.4e-18 95.1 55 80.0
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.1e-18 94.7 67 68.7
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.0e-18 94.4 90 54.4
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.0e-18 94.4 58 69.0
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-17 92.4 50 82.0
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.5e-17 92.4 63 68.3
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.0e-17 92.0 53 77.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.6e-17 91.7 54 74.1
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 9.9e-17 89.7 50 80.0
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 9.9e-17 89.7 54 74.1
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-16 89.4 62 67.7
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.3e-16 89.4 54 75.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.3e-16 89.4 54 75.9
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.7e-16 89.0 122 43.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.2e-16 88.6 50 80.0
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 62 67.7
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 2.2e-16 88.6 51 72.5
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 2.9e-16 88.2 66 59.1
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 3.8e-16 87.8 52 73.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.9e-15 85.5 51 68.6
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.2e-15 84.3 54 68.5
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.4e-15 84.0 53 71.7
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 9.3e-15 83.2 53 66.0
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.2e-14 82.8 48 72.9
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.6e-14 80.9 62 53.2
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.6e-14 80.9 53 69.8
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 7.9e-14 80.1 63 60.3
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 7.9e-14 80.1 65 50.8
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-12 76.3 52 65.4
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-12 76.3 55 60.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 7.4e-12 73.6 52 61.5
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-11 72.8 40 75.0
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-11 71.2 38 76.3
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 6.2e-11 70.5 38 78.9
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.4e-10 69.3 53 58.5
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.0e-09 65.5 32 84.4
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-09 65.1 55 52.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-09 65.1 55 52.7
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.9e-08 61.6 42 66.7
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.9e-07 58.9 36 69.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 9.3e-07 56.6 51 54.9


User provided reference genes

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