Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.2e-98 363.2 184 100.0
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 3.7e-73 278.5 178 73.6
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 3.7e-73 278.5 181 73.5
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 8.3e-73 277.3 178 73.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.1e-72 276.9 181 76.2
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.4e-72 276.6 185 74.6
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 72.3
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 4.1e-72 275.0 178 73.6
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 5.4e-72 274.6 185 74.1
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 5.4e-72 274.6 184 72.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.2e-71 273.5 184 72.8
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 3.5e-71 271.9 180 73.3
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 3.5e-71 271.9 178 71.9
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 72.3
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 71.2
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.0e-70 270.4 184 72.3
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.0e-70 270.4 178 73.6
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.3e-70 270.0 183 73.2
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.7e-70 269.6 184 72.3
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 2.3e-70 269.2 183 70.5
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 2.3e-70 269.2 184 72.3
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 3.0e-70 268.9 178 71.9
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 3.0e-70 268.9 178 72.5
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 3.0e-70 268.9 179 74.3
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 3.9e-70 268.5 184 70.7
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 3.9e-70 268.5 184 70.7
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.1e-70 268.1 176 73.9
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 5.1e-70 268.1 173 75.1
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 5.1e-70 268.1 173 75.1
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 6.6e-70 267.7 176 74.4
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.5e-69 266.5 175 73.1
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.9e-69 266.2 184 70.7
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 1.2e-68 263.5 178 69.1
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.6e-68 263.1 178 73.0
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 1.6e-68 263.1 180 71.1
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.6e-68 263.1 184 69.6
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 2.1e-68 262.7 184 69.6
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 2.8e-68 262.3 180 71.1
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 4.7e-68 261.5 181 69.6
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 8.1e-68 260.8 178 70.2
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 8.1e-68 260.8 178 70.8
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.1e-67 260.4 184 70.1
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.4e-67 260.0 183 68.9
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.4e-67 260.0 182 69.2
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.4e-67 260.0 178 68.5
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.4e-67 260.0 181 69.6
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.8e-67 259.6 178 70.2
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.8e-67 259.6 180 70.0
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.8e-67 259.6 179 72.1
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.8e-67 259.6 183 68.3
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.8e-67 259.6 183 68.3
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 68.5
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 68.5
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 68.5
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 2.4e-67 259.2 178 70.8
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.1e-67 258.8 183 68.3
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 6.8e-67 257.7 178 70.2
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 6.8e-67 257.7 178 69.7
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.5e-66 256.5 178 70.2
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.0e-66 256.1 181 66.9
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 2.0e-66 256.1 181 67.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 2.6e-66 255.8 178 69.7
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 3.4e-66 255.4 178 69.7
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.4e-66 255.4 181 67.4
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.4e-66 255.0 179 68.7
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 2.9e-65 252.3 178 68.5
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 2.9e-65 252.3 179 68.2
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 3.8e-65 251.9 178 68.5
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.8e-65 251.9 175 69.1
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 6.4e-65 251.1 178 66.9
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 8.4e-65 250.8 180 64.4
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.1e-64 250.4 181 65.2
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 1.4e-64 250.0 185 66.5
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.9e-64 249.6 181 65.2
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.9e-64 249.6 181 66.3
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.4e-64 249.2 180 66.7
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.4e-64 249.2 178 68.0
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.2e-64 248.8 181 66.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 9.3e-64 247.3 178 65.7
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 9.3e-64 247.3 180 65.0
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.6e-63 246.5 176 67.6
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 1.6e-63 246.5 179 66.5
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 2.1e-63 246.1 180 67.8
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 6.0e-63 244.6 163 71.8
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 1.7e-62 243.0 179 63.1
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 2.3e-62 242.7 168 68.5
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 3.9e-62 241.9 178 63.5
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.1e-61 240.4 176 63.1
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.5e-61 240.0 172 67.4
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.5e-61 240.0 179 66.5
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 2.8e-60 235.7 178 63.5
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 5.3e-59 231.5 189 60.3
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.0e-58 229.6 176 63.1
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.6e-58 229.2 184 62.5
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 5.8e-58 228.0 180 60.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 4.9e-57 224.9 174 60.9
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 6.4e-57 224.6 174 60.9
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 8.4e-57 224.2 171 61.4
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.5e-55 218.8 175 62.9
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.6e-50 202.6 201 52.7
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.8e-50 201.4 192 53.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.6e-50 201.1 202 52.5
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.1e-47 193.0 135 66.7
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.7e-47 192.6 171 57.9
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-45 187.2 142 63.4
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 2.5e-45 186.0 157 59.2
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 4.3e-45 185.3 157 59.2
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 1.9e-40 169.9 102 77.5
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.4e-35 153.7 188 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 2.0e-34 149.8 169 44.4
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 4.5e-34 148.7 116 60.3
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.0e-33 147.5 107 67.3
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.9e-32 143.3 180 45.0
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.0e-30 137.5 183 41.0
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.0e-30 137.5 175 39.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.3e-30 137.1 87 71.3
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.8e-30 136.7 171 42.1
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.3e-30 136.3 186 40.9
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.3e-25 120.6 169 35.5
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-24 117.1 93 58.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 7.2e-24 114.8 187 40.6
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.7e-20 103.6 75 68.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 6.5e-17 91.7 84 57.1
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.3e-09 67.4 71 43.7
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 2.1e-07 60.1 188 25.5
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 2.1e-07 60.1 164 26.8
Atru.chr7.1340 Acer truncatum HOM05D003111 ORTHO05D003502 1.8e-06 57.0 153 27.5
Os12g0119800 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 4.0e-06 55.8 123 30.9
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 4.0e-06 55.8 138 24.6
TAR624G0200 Trochodendron aralioides HOM05D003111 ORTHO05D003502 5.2e-06 55.5 151 25.8
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 5.2e-06 55.5 138 24.6


User provided reference genes

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