Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.0e-95 352.4 176 100.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 3.0e-56 222.2 178 60.1
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 2.9e-54 215.7 179 60.3
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 9.2e-53 210.7 174 63.2
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 9.2e-53 210.7 177 60.5
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 9.2e-53 210.7 179 59.2
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.8e-52 207.6 176 60.2
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.1e-50 203.8 177 57.1
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.5e-47 193.4 177 57.6
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 5.8e-47 191.4 178 56.2
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.9e-46 188.3 180 56.1
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 6.4e-46 188.0 177 57.1
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 1.9e-45 186.4 177 55.4
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 3.2e-45 185.7 177 55.4
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 4.1e-45 185.3 181 53.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 4.1e-45 185.3 178 56.2
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 7.0e-45 184.5 177 55.4
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.2e-44 183.7 177 52.5
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.0e-44 183.0 176 55.1
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 2.7e-44 182.6 178 53.9
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.0e-44 181.4 174 54.6
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 6.0e-44 181.4 177 55.4
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 7.8e-44 181.0 177 55.9
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 7.8e-44 181.0 180 51.1
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 7.8e-44 181.0 175 54.9
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.3e-43 180.3 179 56.4
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 5.0e-43 178.3 176 51.7
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 6.6e-43 177.9 181 54.1
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.6e-43 177.6 191 53.9
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.1e-42 177.2 180 53.9
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.9e-42 176.4 178 52.2
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.9e-42 176.4 185 53.5
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.5e-42 176.0 181 54.7
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 2.5e-42 176.0 176 54.0
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 5.6e-42 174.9 177 53.1
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 7.3e-42 174.5 177 53.1
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 9.5e-42 174.1 177 54.8
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 9.5e-42 174.1 177 50.3
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 1.2e-41 173.7 173 54.3
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.2e-41 173.7 173 54.3
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.2e-41 173.7 173 54.3
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.6e-41 173.3 176 51.1
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.6e-41 173.3 173 53.2
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.1e-41 172.9 179 54.7
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.6e-41 172.2 173 54.3
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.7e-41 171.8 185 54.1
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.8e-40 169.9 183 51.9
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.1e-40 169.1 172 54.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 5.2e-40 168.3 193 50.3
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.5e-39 166.8 176 52.8
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 2.0e-39 166.4 182 53.3
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.6e-39 166.0 176 51.7
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.4e-39 165.6 176 49.4
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.4e-39 165.6 172 51.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 4.4e-39 165.2 174 50.6
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 4.4e-39 165.2 176 50.0
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 5.8e-39 164.9 177 50.3
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.8e-39 164.9 176 53.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 7.5e-39 164.5 176 50.0
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 7.5e-39 164.5 179 51.4
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 7.5e-39 164.5 176 48.3
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 9.9e-39 164.1 183 49.7
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 9.9e-39 164.1 176 50.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.7e-38 163.3 171 50.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 2.2e-38 162.9 180 51.7
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 2.2e-38 162.9 178 48.9
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 3.7e-38 162.2 169 50.9
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 4.9e-38 161.8 176 48.9
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.1e-37 160.6 171 52.0
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.4e-37 160.2 177 49.7
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.4e-37 160.2 176 50.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 3.2e-37 159.1 177 49.7
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 1.6e-36 156.8 177 50.8
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.6e-36 156.8 179 48.0
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.6e-36 156.8 170 51.2
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 2.7e-36 156.0 177 49.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.7e-36 156.0 184 48.9
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.5e-36 155.6 168 50.6
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.5e-36 155.6 168 50.6
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.5e-36 155.6 178 48.3
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 7.8e-36 154.5 176 46.0
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 1.7e-35 153.3 182 46.7
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.9e-35 152.1 175 49.7
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.1e-34 150.6 179 48.6
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 2.1e-33 146.4 177 46.3
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.7e-33 145.2 170 48.2
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.2e-33 144.8 175 46.9
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.4e-32 143.7 178 46.1
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.4e-32 143.7 183 44.3
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 9.9e-31 137.5 163 46.6
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.8e-30 135.6 177 45.8
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.9e-30 135.2 178 44.9
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.9e-29 133.3 179 44.7
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.2e-28 130.6 176 40.9
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.5e-28 129.0 178 44.4
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.3e-27 126.3 177 44.1
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.9e-27 125.6 181 40.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.1e-26 124.0 168 40.5
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 3.3e-26 122.5 180 45.6
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 4.3e-26 122.1 184 42.4
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.3e-26 122.1 182 42.9
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 5.6e-26 121.7 180 45.6
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 5.6e-26 121.7 180 45.6
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 7.3e-26 121.3 184 40.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 7.3e-26 121.3 131 48.9
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 2.8e-25 119.4 167 43.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 4.7e-25 118.6 182 45.6
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 8.1e-25 117.9 120 49.2
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-24 117.5 180 44.4
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-24 117.5 180 44.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.1e-24 117.5 175 43.4
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 3.1e-24 115.9 179 41.9
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.1e-24 115.9 180 43.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.9e-24 114.8 171 42.1
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.5e-23 113.6 176 40.9
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 1.5e-23 113.6 181 39.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.6e-23 112.8 128 51.6
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.6e-23 112.8 116 51.7
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.4e-23 112.5 177 41.2
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.4e-23 112.5 138 45.7
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 4.4e-23 112.1 177 41.2
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 7.6e-23 111.3 180 40.6
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 9.9e-23 110.9 179 40.2
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.3e-22 110.5 177 39.5
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-21 107.5 179 38.5
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 3.2e-21 105.9 177 39.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.2e-21 105.9 177 37.9
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 4.2e-21 105.5 177 37.9
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 4.2e-21 105.5 177 39.5
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-20 104.0 177 37.3
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 2.7e-20 102.8 105 47.6
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 3.5e-20 102.4 179 39.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.6e-20 102.1 177 38.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.0e-20 101.7 91 60.4
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 5.6e-18 95.1 179 38.0
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.1e-17 91.3 107 54.2
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 1.1e-16 90.9 183 35.0
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.0e-15 86.7 155 36.8
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 2.6e-15 86.3 101 51.5
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.6e-15 84.7 195 32.3
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-10 70.5 175 32.6
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.1e-09 66.6 185 31.9
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 8.1e-09 64.7 68 50.0
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 2.9e-06 56.2 205 25.4


User provided reference genes

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