Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 0.0e+00 1102.0 585 100.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.5e-256 889.4 562 80.1
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.6e-255 885.9 585 76.6
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.4e-254 882.1 567 78.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.9e-254 880.6 562 79.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-253 879.8 562 79.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 7.1e-251 870.5 585 75.7
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-250 869.8 573 77.1
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.5e-250 868.2 560 78.8
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.8e-250 867.1 580 77.6
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.3e-249 866.3 573 76.3
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.7e-249 865.9 560 78.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 6.6e-249 864.0 573 75.9
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.1e-248 863.2 561 77.9
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 9.6e-248 860.1 567 75.5
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.3e-247 859.8 568 76.4
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.8e-246 855.9 567 77.1
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.0e-246 854.7 562 78.1
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.4e-245 851.7 585 75.7
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 7.6e-245 850.5 567 75.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 9.9e-245 850.1 579 73.2
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.3e-244 849.7 585 74.9
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.4e-244 847.0 585 74.7
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.1e-243 846.7 579 75.0
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.4e-243 846.3 587 75.3
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 4.2e-243 844.7 584 73.3
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 7.1e-243 844.0 562 75.6
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 6.0e-242 840.9 573 72.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 6.0e-242 840.9 566 74.6
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.9e-242 840.5 586 73.4
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.8e-241 839.3 614 71.0
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.3e-241 839.0 586 73.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.0e-241 838.6 562 76.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-240 836.6 585 73.8
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.3e-240 834.7 567 73.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.6e-240 834.3 640 69.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.3e-239 833.2 583 72.9
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.1e-239 832.4 571 74.1
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.7e-239 831.6 583 72.9
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.8e-239 831.2 584 72.3
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.2e-239 830.9 567 73.9
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 4.0e-238 828.2 573 72.6
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 4.0e-238 828.2 585 72.8
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.0e-238 828.2 568 73.6
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 5.3e-238 827.8 573 72.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-237 826.6 567 73.4
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.2e-237 826.6 567 74.3
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.2e-237 826.6 615 72.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.0e-237 825.9 567 73.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-237 825.9 575 74.6
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.6e-237 825.5 583 71.4
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.6e-237 825.5 583 71.5
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 3.4e-237 825.1 562 72.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.4e-237 825.1 583 71.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 3.4e-237 825.1 562 73.3
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.5e-237 824.7 563 73.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 5.8e-237 824.3 647 67.5
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-236 823.2 563 73.5
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.9e-236 821.2 563 73.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 6.4e-236 820.8 570 73.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.1e-235 820.1 573 72.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.4e-235 819.7 571 73.4
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.2e-235 818.1 562 73.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.2e-235 818.1 585 71.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 5.5e-235 817.8 562 72.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 7.1e-235 817.4 563 74.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.2e-234 816.6 574 74.2
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.1e-234 815.8 582 70.6
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.5e-234 815.1 562 72.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-233 812.8 578 71.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 3.0e-233 812.0 569 72.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.9e-233 811.6 586 70.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 5.1e-233 811.2 576 72.6
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 6.7e-233 810.8 568 71.8
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 8.7e-233 810.4 560 72.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.5e-232 809.7 567 72.7
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.3e-232 808.1 562 72.8
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.3e-231 806.6 583 69.5
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.7e-231 805.1 573 71.6
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.2e-231 804.3 573 71.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.4e-230 802.4 573 71.0
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 6.9e-230 800.8 585 69.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 6.9e-230 800.8 567 71.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.2e-229 800.0 567 71.8
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 7.6e-229 797.3 580 69.1
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 7.6e-229 797.3 583 69.1
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 7.6e-229 797.3 580 70.7
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.0e-228 797.0 562 72.4
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 3.8e-228 795.0 583 68.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.9e-228 794.7 578 68.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.1e-227 793.5 564 70.7
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.5e-227 792.3 546 72.7
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 5.5e-227 791.2 583 69.0
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.1e-226 789.3 548 74.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.3e-225 786.6 583 69.3
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-224 783.5 580 68.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-224 783.5 579 69.3
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.3e-224 781.6 573 70.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.3e-223 780.0 584 69.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.3e-223 780.0 584 69.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.7e-223 778.5 584 68.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.7e-223 778.5 540 73.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 4.8e-223 778.1 559 69.9
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.8e-223 778.1 580 68.8
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.1e-222 775.0 582 67.9
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.2e-219 765.4 573 68.8
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.2e-219 764.2 541 72.3
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.2e-218 763.5 563 68.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.3e-217 759.2 600 66.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.7e-215 753.1 454 82.2
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.1e-214 750.4 640 62.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.8e-214 749.6 590 66.4
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 6.9e-214 747.7 566 66.8
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.0e-213 746.1 517 71.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.4e-211 740.0 495 75.6
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.9e-211 739.6 564 66.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 6.3e-207 724.5 567 67.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.0e-204 714.9 561 65.1
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 9.7e-200 700.7 561 66.1
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.7e-196 689.9 478 71.5
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.7e-194 682.6 479 72.2
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.5e-187 660.2 568 60.0
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.2e-184 650.6 512 63.3
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 6.3e-183 644.8 563 58.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 5.0e-180 635.2 569 58.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 8.0e-170 601.3 359 84.7
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.0e-166 588.2 421 70.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.9e-155 553.5 422 66.4
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.3e-155 552.7 421 67.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 2.1e-154 550.1 422 66.1
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.6e-149 533.9 375 71.7
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.6e-138 496.1 568 48.4
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 7.8e-133 478.4 548 46.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.5e-131 474.2 353 71.1
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.8e-122 443.4 339 68.7
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.2e-120 438.0 272 79.4
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.3e-99 366.3 220 79.5
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.2e-85 321.6 200 83.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 6.7e-84 315.8 195 76.4
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.1e-65 253.4 222 59.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 3.5e-56 223.8 152 71.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.8e-53 214.2 147 72.1
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.1e-52 210.7 141 74.5
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.6e-47 192.6 189 57.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 5.8e-43 179.9 117 74.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.5e-30 137.9 127 62.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.8e-21 107.8 109 52.3
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.4e-20 105.5 88 58.0
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 4.9e-18 97.1 90 56.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 8.7e-15 86.3 104 45.2
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.6e-13 80.9 91 52.7
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.4e-12 78.2 94 47.9
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.4e-09 68.2 53 60.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.2e-08 65.9 112 36.6
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 7.9e-08 63.2 341 23.2


User provided reference genes

Program Settings