Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 2.0e-175 619.0 319 100.0
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.7e-105 386.7 299 68.6
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.2e-103 380.6 309 62.5
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.0e-102 377.5 303 65.0
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.0e-102 377.5 303 65.0
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.1e-99 365.9 307 64.5
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.1e-99 365.9 307 64.5
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.1e-99 365.9 307 63.2
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 3.1e-99 365.9 285 67.7
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 4.0e-99 365.5 296 64.5
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 6.9e-99 364.8 313 60.1
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 6.9e-99 364.8 307 62.9
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.4e-98 362.5 308 62.3
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.2e-97 359.8 307 63.5
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.9e-97 359.4 307 63.5
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.8e-97 359.0 312 61.9
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.2e-96 355.5 300 64.7
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.1e-96 354.8 307 63.2
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 9.3e-96 354.4 313 61.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.6e-95 352.1 274 66.8
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.6e-95 352.1 300 63.7
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 6.0e-95 351.7 312 62.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 3.0e-94 349.4 293 62.5
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.9e-94 349.0 279 64.2
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 5.7e-93 345.1 302 61.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 7.4e-93 344.7 285 65.3
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 8.2e-92 341.3 299 60.9
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 6.9e-91 338.2 288 61.8
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 9.0e-91 337.8 303 58.4
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.0e-90 336.7 293 60.4
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.6e-90 336.3 291 62.5
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 4.5e-90 335.5 283 61.8
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 4.5e-90 335.5 315 57.8
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 5.8e-90 335.1 295 61.7
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 7.6e-90 334.7 318 56.9
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 5.0e-89 332.0 297 58.9
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.1e-88 330.9 276 59.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 7.2e-88 328.2 305 58.7
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.6e-87 327.0 294 56.8
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 2.7e-87 326.2 293 57.7
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 3.5e-87 325.9 313 56.2
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 4.6e-87 325.5 313 58.5
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 6.1e-87 325.1 295 57.6
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.0e-86 324.3 296 58.4
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.8e-86 323.6 277 58.5
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 5.1e-86 322.0 293 56.3
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.7e-86 321.6 295 58.3
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 6.7e-86 321.6 290 56.9
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 8.7e-86 321.2 311 55.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 1.1e-85 320.9 315 56.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.5e-85 319.7 311 54.0
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 9.7e-85 317.8 268 62.3
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.8e-84 316.2 291 61.2
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 4.8e-84 315.5 390 48.5
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 1.1e-83 314.3 282 58.9
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.8e-83 313.5 293 58.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 4.1e-83 312.4 274 61.7
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 5.3e-83 312.0 279 58.4
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 5.3e-83 312.0 299 54.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 6.9e-83 311.6 328 54.0
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.0e-82 310.1 269 60.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 3.4e-82 309.3 298 56.4
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.5e-82 308.9 268 59.7
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.7e-81 307.0 298 54.4
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 5.0e-81 305.4 281 56.6
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.1e-80 304.3 274 58.0
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.4e-80 303.9 329 52.9
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 1.2e-79 300.8 275 56.7
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 6.1e-79 298.5 319 53.6
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.1e-77 294.3 292 55.1
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 4.3e-77 292.4 314 56.4
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 9.7e-77 291.2 294 53.1
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.4e-75 286.6 283 55.1
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.1e-75 286.2 252 59.5
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 4.5e-74 282.3 264 61.4
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 7.7e-74 281.6 303 50.5
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 2.9e-73 279.6 269 55.8
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 4.2e-72 275.8 278 53.6
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.2e-72 275.8 297 51.9
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 7.2e-72 275.0 296 49.3
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 3.9e-70 269.2 295 49.2
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 3.3e-69 266.2 161 80.7
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 4.4e-69 265.8 311 48.2
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 4.8e-68 262.3 318 49.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-67 260.8 328 45.4
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.2e-66 257.7 308 47.1
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.0e-65 254.6 389 42.2
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 4.2e-64 249.2 307 46.9
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 2.1e-63 246.9 249 54.2
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 6.7e-62 241.9 201 59.7
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.8e-60 235.7 219 58.9
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 7.7e-58 228.4 154 76.0
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.2e-57 226.9 152 75.0
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.8e-57 226.1 267 47.2
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.2e-56 222.6 293 47.4
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 4.2e-56 222.6 290 47.6
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.5e-56 222.2 277 48.4
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-54 217.6 225 51.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.4e-51 207.6 289 42.2
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 7.0e-51 205.3 208 53.8
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.1e-47 192.2 131 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 4.0e-46 189.5 316 37.3
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.0e-46 189.5 279 43.7
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 4.0e-46 189.5 209 51.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.1e-43 179.9 216 48.1
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.9e-40 170.6 272 40.4
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.7e-36 157.5 105 75.2
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.2e-36 157.1 144 57.6
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 3.2e-35 153.3 191 44.0
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.3e-33 147.1 105 71.4
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 4.4e-29 132.9 139 54.7
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 7.5e-29 132.1 152 50.0
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.4e-27 127.9 87 69.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-27 127.1 131 53.4
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 3.9e-25 119.8 81 72.8
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-24 117.1 116 58.6
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.4e-22 111.3 166 42.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 2.0e-21 107.5 155 41.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.7e-17 94.4 128 42.2
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 8.1e-15 85.5 72 63.9
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.0e-13 80.9 92 53.3
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 8.4e-12 75.5 82 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 5.4e-11 72.8 159 31.4
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.0e-09 68.6 63 57.1
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.5e-08 63.9 90 37.8
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.5e-08 63.9 86 44.2
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 9.6e-08 62.0 55 58.2
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 2.8e-07 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 4.7e-07 59.7 54 57.4
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-06 58.5 68 55.9
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 4.0e-06 56.6 68 52.9
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 4.0e-06 56.6 150 30.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 5.2e-06 56.2 150 30.7
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 6.8e-06 55.8 215 25.6


User provided reference genes

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