Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 3.3e-83 311.6 152 100.0
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.8e-66 255.4 152 79.6
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 2.8e-66 255.4 150 82.7
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 4.8e-66 254.6 152 79.6
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 8.2e-66 253.8 149 82.6
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.0e-64 249.2 149 79.2
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 5.9e-64 247.7 150 78.7
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.3e-63 246.5 148 79.1
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.3e-63 246.5 148 82.4
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 2.9e-63 245.4 149 77.2
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 8.5e-63 243.8 149 79.2
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.1e-62 243.4 149 77.2
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.9e-62 242.7 150 80.7
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 5.5e-62 241.1 144 82.6
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 7.2e-62 240.7 149 78.5
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 9.3e-62 240.4 149 79.2
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.7e-61 238.8 147 80.3
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 3.6e-61 238.4 149 77.9
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.3e-60 236.5 149 79.2
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 5.1e-60 234.6 151 76.2
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 5.1e-60 234.6 145 78.6
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 5.1e-60 234.6 151 77.5
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 2.5e-59 232.3 152 77.6
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.3e-59 231.9 151 77.5
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 5.7e-59 231.1 150 77.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 1.3e-58 229.9 147 76.9
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.3e-58 229.9 151 76.8
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 1.3e-58 229.9 147 76.9
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 2.2e-58 229.2 149 73.2
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.7e-58 228.4 151 76.2
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 3.7e-58 228.4 147 75.5
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 4.8e-58 228.0 149 75.2
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.4e-57 226.5 147 74.8
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.4e-57 226.5 147 74.8
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.4e-57 225.7 149 75.2
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 2.4e-57 225.7 153 75.2
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 3.1e-57 225.3 152 71.1
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 4.1e-57 224.9 149 75.2
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 9.0e-57 223.8 152 71.1
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 1.5e-56 223.0 144 75.0
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 2.0e-56 222.6 152 71.7
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 2.0e-56 222.6 149 73.8
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.6e-56 222.2 150 75.3
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.6e-56 222.2 179 65.4
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 5.9e-56 221.1 148 75.0
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.0e-55 220.3 149 74.5
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.3e-55 219.9 152 71.1
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 2.2e-55 219.2 152 70.4
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.2e-55 219.2 152 70.4
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 2.2e-55 219.2 152 70.4
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 2.2e-55 219.2 149 69.8
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 3.8e-55 218.4 150 72.0
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 6.5e-55 217.6 152 71.1
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 6.5e-55 217.6 152 71.1
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 6.5e-55 217.6 152 71.1
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 8.5e-55 217.2 152 69.7
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 1.4e-54 216.5 152 69.7
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 1.4e-54 216.5 152 69.7
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 1.9e-54 216.1 152 69.1
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 4.2e-54 214.9 153 68.0
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 5.5e-54 214.5 149 70.5
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 7.2e-54 214.2 149 70.5
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 9.4e-54 213.8 153 68.0
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 1.2e-53 213.4 150 70.0
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 2.1e-53 212.6 149 72.5
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 2.1e-53 212.6 115 80.9
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 4.6e-53 211.5 152 70.4
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 4.6e-53 211.5 152 70.4
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 1.4e-52 209.9 153 66.0
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.8e-52 209.5 149 67.8
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.9e-52 208.4 151 70.9
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 5.1e-52 208.0 150 70.7
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 8.8e-52 207.2 151 69.5
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.5e-51 206.5 151 70.2
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.0e-51 206.1 152 65.8
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.0e-51 206.1 151 70.2
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 2.0e-51 206.1 150 70.0
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 3.3e-51 205.3 145 71.0
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 7.4e-51 204.1 125 76.0
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 7.4e-51 204.1 143 68.5
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 9.7e-51 203.8 114 81.6
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 9.7e-51 203.8 151 68.9
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 9.7e-51 203.8 151 68.9
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 9.7e-51 203.8 152 69.1
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.3e-50 203.4 146 69.2
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 1.3e-50 203.4 147 70.7
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 1.7e-50 203.0 151 69.5
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.8e-50 201.4 141 68.1
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 8.2e-50 200.7 152 63.2
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.1e-49 200.3 146 67.8
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.4e-49 199.9 145 70.3
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.4e-49 199.9 146 71.2
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.4e-49 199.9 143 67.8
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 2.4e-49 199.1 149 67.1
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 6.9e-49 197.6 113 77.9
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 2.6e-48 195.7 123 74.8
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 4.5e-48 194.9 151 66.2
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.7e-47 193.0 151 65.6
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 6.5e-47 191.0 152 65.8
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.4e-46 189.9 115 77.4
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 2.5e-46 189.1 141 66.0
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 4.2e-46 188.3 151 64.2
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 6.1e-45 184.5 120 75.0
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 7.9e-45 184.1 147 64.6
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 2.3e-44 182.6 148 62.8
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.0e-44 182.2 149 62.4
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 6.7e-44 181.0 116 71.6
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 6.7e-44 181.0 151 62.3
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.1e-43 180.3 150 58.0
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 5.7e-43 177.9 115 77.4
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 9.7e-43 177.2 133 68.4
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 3.1e-41 172.2 99 76.8
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 7.7e-40 167.5 89 84.3
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.9e-38 162.9 89 79.8
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.9e-38 162.9 140 59.3
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.5e-38 161.4 118 71.2
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 5.5e-38 161.4 87 82.8
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 8.8e-36 154.1 119 69.7
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 2.8e-34 149.1 118 66.9
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 8.2e-34 147.5 121 66.9
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 1.7e-31 139.8 120 57.5
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 6.5e-31 137.9 118 62.7
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 3.2e-30 135.6 115 68.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 8.0e-29 131.0 91 71.4
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 7.5e-27 124.4 88 67.0
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 4.8e-26 121.7 152 48.7
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 9.5e-22 107.5 134 42.5
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.6e-21 106.7 93 59.1
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 3.7e-18 95.5 144 39.6
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 6.3e-18 94.7 157 42.7
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 7.0e-17 91.3 82 63.4
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.0e-15 87.4 73 65.8
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 3.4e-11 72.4 79 57.0
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.7e-10 70.1 79 51.9


User provided reference genes

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