Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 0.0e+00 1208.4 652 100.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 7.4e-225 784.3 650 66.9
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 3.7e-224 781.9 657 65.8
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 8.3e-216 754.2 658 63.5
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.2e-214 750.4 653 61.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.6e-214 750.0 656 63.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 5.0e-213 745.0 651 64.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.2e-212 741.9 652 63.8
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.0e-210 735.3 656 62.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 9.8e-209 730.7 620 65.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.0e-206 723.0 659 61.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 5.9e-206 721.5 656 62.7
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 7.7e-206 721.1 656 61.9
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.3e-204 715.7 656 60.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 8.0e-203 711.1 663 60.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.0e-202 709.1 665 60.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.0e-201 706.4 646 61.5
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 5.7e-201 704.9 655 59.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.0e-197 691.8 666 58.0
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 6.6e-197 691.4 666 58.6
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.6e-197 691.4 666 59.9
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.5e-196 689.5 666 58.6
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.5e-196 689.5 666 58.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.6e-195 686.8 666 59.5
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.6e-195 685.6 664 58.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-194 683.7 652 58.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 4.0e-194 682.2 659 58.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.2e-193 680.6 678 57.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.4e-193 679.1 668 58.2
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.9e-191 673.3 660 57.9
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.9e-191 673.3 658 57.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.4e-191 672.9 659 57.8
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 4.1e-191 672.2 645 58.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.4e-191 671.8 656 58.5
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-190 670.2 658 57.6
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.0e-190 669.8 660 57.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.8e-190 667.9 653 58.7
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-189 667.2 658 57.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 6.6e-189 664.8 654 56.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.9e-188 663.3 661 57.2
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-188 662.9 677 55.7
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.3e-188 662.5 660 57.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.3e-188 662.1 677 55.7
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.5e-188 661.0 677 55.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.5e-188 661.0 677 55.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-187 660.2 666 56.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-187 659.4 677 55.7
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 3.6e-187 659.1 677 55.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-186 656.4 677 55.1
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.8e-186 654.8 677 55.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.4e-185 652.1 654 56.6
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 7.8e-182 641.3 649 55.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 9.5e-180 634.4 655 54.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 4.7e-179 632.1 663 57.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.0e-178 629.0 664 54.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 5.2e-178 628.6 656 56.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 6.4e-176 621.7 658 53.6
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.4e-175 620.5 570 61.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.1e-175 619.0 653 55.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.6e-174 615.5 662 54.7
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 8.6e-173 611.3 662 54.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 4.3e-172 609.0 656 54.6
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 5.8e-169 598.6 669 52.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.9e-169 597.8 648 54.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 8.4e-168 594.7 652 53.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.2e-166 590.9 654 52.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 2.7e-166 589.7 656 52.4
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.7e-166 589.7 664 52.9
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 3.5e-166 589.3 647 53.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 3.5e-166 589.3 653 53.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 4.6e-166 589.0 674 52.5
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.7e-165 587.0 658 52.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.1e-165 585.5 664 51.4
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.8e-163 579.7 590 55.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.4e-161 572.4 670 52.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.7e-160 570.5 656 49.8
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.2e-159 566.2 659 52.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-159 565.8 651 51.3
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-158 564.3 648 51.4
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.6e-158 563.9 674 49.4
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-158 563.5 651 51.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.7e-158 563.1 649 51.5
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.5e-158 562.8 652 51.2
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.6e-158 562.4 648 51.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.0e-157 561.2 658 51.5
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.6e-156 555.4 671 48.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.4e-156 555.1 660 50.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.6e-155 552.7 670 48.5
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 9.9e-153 544.7 664 49.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 8.7e-149 531.6 612 52.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.7e-147 526.2 600 53.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 6.2e-147 525.4 651 49.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 8.1e-147 525.0 655 46.9
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 3.1e-146 523.1 642 48.0
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 8.4e-144 515.0 644 50.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 2.3e-141 506.9 420 66.2
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 2.1e-139 500.4 645 48.1
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.1e-138 498.0 648 49.2
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.4e-138 496.9 428 64.5
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.6e-137 491.9 430 63.0
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.7e-136 490.7 677 47.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.6e-134 482.6 430 62.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.7e-133 478.8 680 43.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-131 474.2 665 44.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.2e-127 458.8 632 44.6
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.4e-125 454.5 647 43.1
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.8e-125 454.1 679 41.2
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 5.9e-121 439.1 529 49.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 6.7e-117 425.6 696 40.5
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.1e-116 424.9 409 58.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.2e-111 406.4 644 43.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-110 404.4 346 64.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-105 388.3 659 40.7
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.0e-101 373.2 336 62.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-99 367.1 645 39.8
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-98 365.2 643 40.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.4e-98 362.8 644 39.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.3e-96 358.2 643 39.5
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-94 350.9 653 38.0
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 6.1e-94 349.4 661 37.4
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-91 339.3 645 38.3
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-89 333.6 658 37.1
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.0e-85 322.0 415 45.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.4e-84 316.6 639 36.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.0e-80 305.4 418 44.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 8.6e-80 302.4 643 36.4
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 6.4e-75 286.2 671 31.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.3e-71 272.7 640 35.5
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-70 271.6 640 35.2
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-69 268.5 641 34.3
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-60 238.0 618 33.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-57 227.6 589 32.9
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 8.9e-53 212.6 171 67.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.8e-46 190.3 318 42.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-45 188.3 478 33.3
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.4e-45 188.0 273 46.2
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.8e-43 180.6 669 27.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 6.0e-41 173.3 196 55.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.1e-40 170.2 114 74.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-38 165.6 115 71.3
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.2e-35 154.8 124 68.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-32 145.2 170 48.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 5.6e-31 140.2 272 39.3
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-30 137.9 93 74.2
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.6e-28 131.3 93 69.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.3e-27 129.0 90 67.8
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 8.4e-27 126.3 105 61.0
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-26 125.2 157 51.0
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-26 124.0 369 33.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.1e-25 121.7 141 50.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.3e-24 118.2 71 77.5
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.3e-24 118.2 100 63.0
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 9.7e-23 112.8 90 61.1
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-21 106.7 90 58.9
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.2e-20 105.9 338 27.8
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 2.0e-20 105.1 72 76.4
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.1e-18 99.4 171 39.8
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.5e-18 98.2 88 55.7
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 9.3e-18 96.3 108 50.9
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.1e-17 93.6 136 44.9
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.8e-14 84.7 143 44.8
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 6.9e-13 80.1 218 32.6
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.2e-12 79.3 51 74.5
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 5.9e-12 77.0 218 32.1
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 5.9e-12 77.0 218 32.1
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 7.2e-10 70.1 80 48.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-08 66.2 88 39.8
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-08 66.2 60 50.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.3e-08 65.1 69 53.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.3e-08 65.1 57 57.9
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 4.8e-06 57.4 83 42.2


User provided reference genes

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