Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 1.7e-100 369.4 196 100.0
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 7.3e-67 257.7 197 74.6
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 4.7e-66 255.0 200 71.5
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.4e-65 253.4 169 81.7
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 2.3e-65 252.7 200 75.0
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 6.8e-65 251.1 208 68.8
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 8.9e-65 250.8 164 83.5
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 1.5e-64 250.0 196 75.0
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.5e-64 250.0 206 69.9
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.7e-63 246.5 209 67.5
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 1.7e-63 246.5 195 72.8
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 4.9e-63 245.0 197 72.1
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 6.4e-63 244.6 204 69.6
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 8.3e-63 244.2 201 72.1
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 1.4e-62 243.4 197 70.1
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 1.9e-62 243.0 157 82.8
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 2.4e-62 242.7 169 79.9
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 3.2e-62 242.3 196 70.9
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 4.1e-62 241.9 203 67.5
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 5.4e-62 241.5 204 70.6
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 5.4e-62 241.5 169 79.3
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 5.4e-62 241.5 204 68.1
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.2e-61 240.4 171 78.9
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.2e-61 240.4 171 78.9
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.6e-61 240.0 168 79.8
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.6e-61 240.0 168 79.8
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 1.6e-61 240.0 185 76.2
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 2.1e-61 239.6 201 70.1
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 2.7e-61 239.2 197 73.1
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 2.7e-61 239.2 156 82.1
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 2.7e-61 239.2 154 83.1
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 2.7e-61 239.2 168 79.2
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 4.6e-61 238.4 169 76.9
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 4.6e-61 238.4 180 74.4
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.6e-61 238.4 180 74.4
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 6.0e-61 238.0 171 77.8
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 6.0e-61 238.0 173 75.1
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 7.8e-61 237.7 196 69.4
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 7.8e-61 237.7 201 71.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 7.8e-61 237.7 196 71.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.0e-60 237.3 206 69.9
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.0e-60 237.3 181 72.9
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 1.3e-60 236.9 203 70.0
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 1.3e-60 236.9 173 76.3
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 1.7e-60 236.5 159 82.4
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.7e-60 236.5 180 73.9
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 1.7e-60 236.5 197 67.5
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 2.3e-60 236.1 200 70.0
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 3.0e-60 235.7 163 79.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 3.0e-60 235.7 180 72.2
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 3.9e-60 235.3 181 72.4
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.1e-60 235.0 156 82.1
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 8.6e-60 234.2 163 78.5
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 8.6e-60 234.2 185 72.4
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 8.6e-60 234.2 159 81.1
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.1e-59 233.8 149 85.9
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.5e-59 233.4 165 78.8
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 1.9e-59 233.0 161 80.1
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 1.9e-59 233.0 205 68.8
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 2.5e-59 232.6 198 68.2
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.5e-59 232.6 171 76.6
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 2.5e-59 232.6 201 66.7
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 2.5e-59 232.6 198 70.2
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 3.3e-59 232.3 160 77.5
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 4.3e-59 231.9 157 80.3
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 5.6e-59 231.5 177 71.2
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 9.5e-59 230.7 201 67.2
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 1.6e-58 229.9 153 82.4
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 2.8e-58 229.2 205 67.3
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 3.6e-58 228.8 199 67.8
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 3.6e-58 228.8 195 69.2
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 3.6e-58 228.8 195 69.2
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 3.6e-58 228.8 179 69.3
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 3.6e-58 228.8 205 65.4
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 4.7e-58 228.4 197 66.0
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 6.2e-58 228.0 152 80.3
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 6.2e-58 228.0 185 71.4
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 8.1e-58 227.6 162 77.8
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 1.1e-57 227.3 200 68.0
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 3.1e-57 225.7 187 71.7
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 5.2e-57 224.9 187 70.6
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 5.2e-57 224.9 199 66.8
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 5.2e-57 224.9 199 66.8
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 8.9e-57 224.2 167 74.9
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 2.0e-56 223.0 197 66.5
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.6e-56 222.6 159 78.6
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 2.6e-56 222.6 190 66.3
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 2.6e-56 222.6 205 64.4
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 4.4e-56 221.9 167 76.0
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 4.4e-56 221.9 198 69.2
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 7.6e-56 221.1 189 68.3
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 9.9e-56 220.7 133 87.2
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 1.3e-55 220.3 169 72.8
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.3e-55 220.3 172 72.7
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.9e-55 219.2 152 78.3
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 4.2e-54 215.3 177 68.9
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 2.7e-53 212.6 151 74.8
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 3.5e-53 212.2 151 74.8
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 1.6e-50 203.4 175 65.1
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 1.8e-49 199.9 149 73.8
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 4.4e-48 195.3 203 61.6
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 2.9e-47 192.6 157 67.5
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 8.4e-47 191.0 118 89.0
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 1.9e-46 189.9 183 59.0
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 3.2e-46 189.1 120 84.2
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 7.1e-46 188.0 173 61.8
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 9.3e-46 187.6 116 83.6
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 2.1e-45 186.4 148 65.5
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.3e-44 183.7 144 67.4
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 3.0e-44 182.6 164 62.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 6.6e-44 181.4 130 74.6
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 2.5e-43 179.5 143 67.1
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 1.3e-39 167.2 109 81.7
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 8.4e-39 164.5 174 52.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 3.9e-36 155.6 174 52.3
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 5.6e-35 151.8 158 60.1
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 2.1e-34 149.8 141 55.3
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 1.4e-33 147.1 162 56.8
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 9.0e-33 144.4 135 60.0
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 6.4e-31 138.3 87 86.2
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-30 137.5 87 85.1
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.2e-30 135.6 87 83.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.6e-29 133.7 142 57.7
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.9e-27 126.7 86 76.7
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 9.0e-25 117.9 92 71.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 5.8e-24 115.2 78 76.9
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 2.7e-21 106.3 93 65.6
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 5.3e-17 92.0 56 76.8
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.2e-07 60.1 105 37.1
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 5.5e-06 55.5 128 32.0


User provided reference genes

Program Settings