Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 2.0e-42 175.3 81 100.0
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 7.5e-34 146.7 81 81.5
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 9.8e-34 146.4 81 80.2
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.2e-33 145.2 81 80.2
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 2.8e-33 144.8 81 75.3
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 1.1e-32 142.9 81 76.5
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.8e-32 142.1 81 77.8
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.4e-32 141.7 81 79.0
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.4e-32 141.7 81 80.2
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.4e-32 141.7 81 77.8
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 4.1e-32 141.0 81 77.8
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 4.1e-32 141.0 81 77.8
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 1.2e-31 139.4 81 76.5
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.2e-31 139.4 81 77.8
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 1.2e-31 139.4 81 75.3
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.6e-31 139.0 81 76.5
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.7e-31 138.3 81 80.2
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 2.7e-31 138.3 81 76.5
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 3.5e-31 137.9 81 76.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.5e-31 137.5 81 75.3
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 4.5e-31 137.5 81 76.5
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 5.9e-31 137.1 81 75.3
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 7.8e-31 136.7 81 71.6
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 7.8e-31 136.7 81 71.6
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 7.8e-31 136.7 80 72.5
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 1.0e-30 136.3 81 75.3
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 1.3e-30 136.0 81 71.6
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.7e-30 135.6 81 76.5
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 1.7e-30 135.6 81 74.1
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 2.3e-30 135.2 81 75.3
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 2.9e-30 134.8 81 74.1
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 3.8e-30 134.4 81 72.8
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 3.8e-30 134.4 75 78.7
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 5.0e-30 134.0 72 77.8
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 8.6e-30 133.3 81 74.1
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.1e-29 132.9 81 70.4
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 2.5e-29 131.7 81 71.6
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 4.3e-29 131.0 81 69.1
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 7.3e-29 130.2 80 68.8
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 7.3e-29 130.2 81 67.9
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 7.3e-29 130.2 83 69.9
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 9.5e-29 129.8 86 68.6
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 9.5e-29 129.8 81 74.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 9.5e-29 129.8 86 67.4
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 1.2e-28 129.4 83 68.7
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 2.1e-28 128.6 81 67.9
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 2.8e-28 128.3 81 72.8
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.4e-27 125.9 85 65.9
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 1.4e-27 125.9 81 67.9
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 1.4e-27 125.9 81 67.9
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 1.4e-27 125.9 81 67.9
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.4e-27 125.9 86 66.3
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 1.8e-27 125.6 85 64.7
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 4.0e-27 124.4 81 67.9
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 8.9e-27 123.2 83 67.5
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 8.9e-27 123.2 81 65.4
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 8.9e-27 123.2 79 62.0
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.5e-26 122.5 76 68.4
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.5e-26 122.5 85 62.4
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.5e-26 122.5 86 62.8
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 2.6e-26 121.7 85 62.4
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 3.4e-26 121.3 81 66.7
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 5.7e-26 120.6 82 69.5
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 5.7e-26 120.6 82 69.5
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 7.5e-26 120.2 82 69.5
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 9.8e-26 119.8 81 65.4
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 9.8e-26 119.8 81 65.4
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.7e-25 119.0 81 65.4
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.7e-25 119.0 81 61.7
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.9e-25 118.2 81 64.2
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 2.9e-25 118.2 86 61.6
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 3.7e-25 117.9 81 65.4
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 4.9e-25 117.5 86 61.6
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 4.9e-25 117.5 86 61.6
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 4.9e-25 117.5 86 61.6
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 6.4e-25 117.1 82 67.1
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 8.3e-25 116.7 82 68.3
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-24 115.9 87 59.8
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 2.4e-24 115.2 85 61.2
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 2.4e-24 115.2 85 61.2
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 2.4e-24 115.2 85 61.2
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 60.5
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 61.7
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 59.3
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 1.6e-23 112.5 81 61.7
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 2.3e-22 108.6 80 53.8
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.5e-21 105.9 81 53.1
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 4.0e-19 97.8 68 63.2
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 5.4e-08 60.8 53 45.3
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 7.8e-07 57.0 42 52.4


User provided reference genes

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