Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.8e-117 426.0 229 100.0
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.8e-80 303.1 230 72.6
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 3.5e-76 288.9 227 69.6
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.3e-75 287.0 237 67.9
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 3.2e-74 282.3 234 66.2
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 6.7e-72 274.6 243 65.4
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 7.4e-71 271.2 257 62.3
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 9.7e-71 270.8 231 67.1
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 2.2e-70 269.6 232 65.1
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 8.2e-70 267.7 256 61.3
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.0e-67 260.8 252 60.7
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 1.0e-67 260.8 235 63.4
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.3e-67 260.4 229 65.1
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 1.3e-67 260.4 225 63.6
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.3e-67 260.4 231 64.1
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 1.7e-67 260.0 226 64.2
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 2.9e-67 259.2 230 62.6
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 2.9e-67 259.2 248 62.5
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 5.0e-67 258.5 225 61.8
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 3.2e-66 255.8 226 65.0
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 5.5e-66 255.0 246 61.0
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 7.2e-66 254.6 225 64.9
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 7.2e-66 254.6 237 61.6
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 1.6e-65 253.4 255 58.4
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 1.6e-65 253.4 225 62.7
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 4.7e-65 251.9 237 63.7
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 6.1e-65 251.5 226 64.2
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 8.0e-65 251.1 226 64.6
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 1.4e-64 250.4 243 59.3
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.3e-64 249.6 227 62.1
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 3.0e-64 249.2 226 61.5
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 5.2e-64 248.4 252 58.7
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 2.0e-63 246.5 252 58.3
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 2.0e-63 246.5 226 62.4
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 5.7e-63 245.0 244 61.1
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 9.7e-63 244.2 226 61.9
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.3e-62 243.8 226 61.5
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 1.7e-62 243.4 232 61.6
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 2.2e-62 243.0 254 57.9
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 3.7e-62 242.3 252 56.7
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 4.8e-62 241.9 226 59.3
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 8.3e-62 241.1 225 59.6
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.4e-61 240.4 226 58.8
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 7.0e-61 238.0 242 57.9
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 1.2e-60 237.3 231 59.3
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 2.0e-60 236.5 242 57.0
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.0e-60 236.5 225 61.8
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 3.5e-60 235.7 230 57.8
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 4.5e-60 235.3 252 56.0
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 1.0e-59 234.2 239 56.9
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 1.3e-59 233.8 202 66.8
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 2.9e-59 232.6 224 60.3
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 3.8e-59 232.3 224 60.3
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 5.0e-59 231.9 226 60.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 3.2e-58 229.2 239 55.6
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 3.2e-58 229.2 218 62.4
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 5.5e-58 228.4 239 56.9
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 6.1e-57 224.9 292 49.7
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 1.4e-56 223.8 198 64.6
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 6.8e-56 221.5 228 57.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 8.8e-56 221.1 239 55.2
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.2e-55 220.7 147 85.0
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 2.2e-54 216.5 225 58.2
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 2.2e-54 216.5 239 55.2
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 2.8e-54 216.1 225 57.3
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 4.8e-54 215.3 207 60.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 6.3e-54 214.9 216 56.5
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.8e-53 213.4 225 56.0
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 3.5e-52 209.1 203 59.1
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 4.5e-52 208.8 225 55.6
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 7.7e-52 208.0 234 53.0
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 1.3e-51 207.2 232 54.3
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.7e-51 206.8 200 60.0
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 1.5e-50 203.8 230 54.8
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 2.5e-50 203.0 197 57.9
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-49 200.7 266 51.1
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 2.3e-48 196.4 195 57.4
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 8.9e-48 194.5 221 53.4
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 8.3e-46 188.0 218 54.1
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 1.4e-45 187.2 238 47.9
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 1.1e-42 177.6 110 81.8
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 5.6e-42 175.3 224 46.0
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 9.5e-42 174.5 284 42.6
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.2e-41 174.1 226 47.8
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.2e-41 174.1 224 45.5
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.6e-41 173.7 226 46.9
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 2.8e-41 172.9 226 48.2
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 6.1e-41 171.8 224 46.9
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.1e-41 171.8 120 75.8
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.0e-40 171.0 225 47.1
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 1.0e-40 171.0 226 46.9
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 1.0e-40 171.0 226 46.9
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 1.0e-40 171.0 226 46.9
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.3e-40 169.9 120 75.0
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 5.2e-40 168.7 104 81.7
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 8.9e-40 167.9 225 47.1
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 1.2e-39 167.5 172 55.8
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 5.8e-39 165.2 224 44.6
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.8e-39 164.5 95 87.4
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 9.8e-39 164.5 120 71.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.7e-38 163.7 194 51.5
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.7e-38 163.7 202 52.0
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 3.7e-38 162.5 172 59.9
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 7.0e-37 158.3 255 41.2
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 4.6e-36 155.6 108 74.1
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 4.6e-36 155.6 222 46.4
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 1.3e-35 154.1 174 55.2
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 2.5e-34 149.8 261 39.5
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 2.8e-33 146.4 221 42.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.7e-33 145.6 98 76.5
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 2.3e-32 143.3 107 67.3
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.9e-30 136.3 122 63.9
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 3.7e-30 136.0 241 37.8
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 4.7e-25 119.0 246 33.3
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 6.8e-24 115.2 257 31.5
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.0e-23 113.6 91 62.6
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 5.8e-23 112.1 159 44.7
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 7.6e-23 111.7 159 44.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 9.2e-21 104.8 100 50.0
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 9.2e-21 104.8 133 49.6
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.0e-20 102.1 62 82.3
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 7.8e-20 101.7 166 45.8
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 1.7e-19 100.5 62 87.1
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.4e-16 90.9 76 63.2
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 5.2e-16 89.0 142 43.0
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 6.8e-16 88.6 158 39.9
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 5.8e-15 85.5 142 44.4
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 7.6e-15 85.1 165 37.0
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 6.4e-14 82.0 156 38.5
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 6.4e-14 82.0 53 73.6
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.4e-13 80.9 173 37.0
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 7.1e-13 78.6 62 71.0
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 1.0e-11 74.7 222 30.6
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.3e-10 69.7 97 47.4
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 4.3e-10 69.3 124 38.7
CAN.G257.103 Capsicum annuum HOM05D005370 ORTHO05D006659 2.0e-07 60.5 54 63.0
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.4e-07 59.7 49 53.1
Os11g0551350 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 2.9e-06 56.6 61 44.3


User provided reference genes

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