Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.0e-77 293.5 168 100.0
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 9.1e-42 174.1 172 62.8
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.6e-41 173.3 179 62.6
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.3e-40 170.2 170 64.7
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 2.9e-40 169.1 176 63.1
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.1e-39 167.2 170 64.1
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 1.8e-37 159.8 170 62.9
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 8.8e-37 157.5 137 70.8
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.1e-36 157.1 166 63.3
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 2.6e-36 156.0 137 69.3
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 5.7e-36 154.8 170 61.8
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 1.3e-35 153.7 171 62.6
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 1.7e-35 153.3 164 58.5
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 3.7e-35 152.1 118 71.2
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 6.3e-35 151.4 135 68.1
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 6.3e-35 151.4 135 68.1
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 6.3e-35 151.4 135 68.1
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 6.3e-35 151.4 134 70.1
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 8.2e-35 151.0 163 63.2
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.8e-34 149.8 124 71.0
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 3.1e-34 149.1 165 60.6
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 1.2e-33 147.1 98 82.7
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 1.6e-33 146.7 146 61.6
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 2.0e-33 146.4 158 60.8
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 3.5e-33 145.6 129 66.7
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 5.9e-33 144.8 160 58.8
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 7.7e-33 144.4 165 63.0
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 7.7e-33 144.4 127 69.3
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 1.0e-32 144.1 152 61.8
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 1.3e-32 143.7 111 70.3
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 1.3e-32 143.7 111 70.3
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.7e-32 143.3 165 56.4
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 2.2e-32 142.9 135 64.4
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.2e-32 142.9 132 68.9
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 2.9e-32 142.5 102 78.4
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 3.8e-32 142.1 172 56.4
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 6.5e-32 141.4 127 66.9
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 1.1e-31 140.6 132 67.4
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.9e-31 139.8 85 78.8
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 2.5e-31 139.4 159 57.9
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 2.5e-31 139.4 162 51.9
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 3.2e-31 139.0 159 57.9
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 7.2e-31 137.9 137 63.5
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 3.6e-30 135.6 95 78.9
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 4.7e-30 135.2 86 82.6
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 4.7e-30 135.2 98 74.5
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 4.7e-30 135.2 115 65.2
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 6.1e-30 134.8 140 60.7
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 6.1e-30 134.8 98 74.5
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 6.1e-30 134.8 148 56.8
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.4e-29 133.7 147 56.5
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.8e-29 133.3 100 69.0
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 3.0e-29 132.5 106 71.7
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.2e-28 130.6 142 57.0
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 1.5e-28 130.2 137 59.1
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 9.8e-28 127.5 100 73.0
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.3e-27 127.1 83 83.1
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 1.3e-27 127.1 170 55.3
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 1.7e-27 126.7 84 67.9
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 2.2e-27 126.3 125 58.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 2.8e-27 125.9 83 79.5
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 2.8e-27 125.9 123 64.2
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 4.8e-27 125.2 93 75.3
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 6.3e-27 124.8 140 60.0
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 5.4e-26 121.7 93 68.8
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 5.4e-26 121.7 85 64.7
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 7.0e-26 121.3 83 78.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 2.0e-25 119.8 83 73.5
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 2.7e-25 119.4 99 69.7
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 4.5e-25 118.6 150 54.7
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 5.9e-25 118.2 113 61.9
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 7.7e-25 117.9 98 67.3
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.3e-24 117.1 146 52.1
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 2.9e-24 115.9 108 63.9
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 5.0e-24 115.2 108 63.9
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 5.0e-24 115.2 108 63.9
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 5.0e-24 115.2 108 63.9
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 5.0e-24 115.2 108 63.9
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 5.0e-24 115.2 108 63.9
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 5.0e-24 115.2 166 51.2
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 1.1e-23 114.0 88 63.6
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 5.5e-23 111.7 96 69.8
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 5.5e-23 111.7 96 69.8
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 7.2e-23 111.3 209 38.8
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 4.7e-22 108.6 83 71.1
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 4.7e-22 108.6 96 66.7
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 1.2e-20 104.0 151 55.0
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 3.4e-20 102.4 98 60.2
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 4.4e-20 102.1 98 60.2
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 1.3e-19 100.5 120 55.0
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 2.9e-16 89.4 42 85.7
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.9e-15 86.7 76 67.1
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 5.6e-15 85.1 92 58.7
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 4.7e-14 82.0 133 49.6
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 1.1e-10 70.9 54 68.5
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 2.4e-10 69.7 38 81.6
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 2.3e-08 63.2 36 80.6
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 3.9e-08 62.4 31 80.6
DCAR_012259 Daucus carota HOM05D007375 ORTHO05D009293 4.3e-07 58.9 112 46.4
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 8.0e-06 54.7 104 48.1


User provided reference genes

Program Settings