Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 6.0e-85 317.4 151 100.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 9.9e-64 246.9 146 76.0
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.7e-63 246.1 149 74.5
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.9e-63 245.4 145 75.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.4e-62 243.0 148 75.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.9e-62 242.7 151 74.8
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 2.4e-62 242.3 143 76.2
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.4e-62 242.3 140 75.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.4e-62 242.3 148 75.0
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.4e-62 242.3 148 75.0
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.2e-62 241.9 147 72.8
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 7.1e-62 240.7 148 74.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.1e-62 240.7 144 75.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 9.3e-62 240.4 140 77.1
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.6e-61 239.6 142 75.4
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.1e-61 239.2 145 76.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.7e-61 238.8 143 74.8
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 3.5e-61 238.4 145 75.2
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.5e-61 238.4 146 73.3
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.0e-60 236.9 145 73.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.8e-60 236.1 145 73.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.3e-60 235.7 149 69.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.0e-60 235.3 143 73.4
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.0e-60 235.3 146 72.6
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 3.9e-60 235.0 146 70.5
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.1e-60 234.6 141 74.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.5e-59 233.0 141 74.5
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.3e-59 231.9 145 71.0
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 4.3e-59 231.5 146 70.5
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 7.4e-59 230.7 146 71.9
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.6e-59 230.3 146 74.0
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 9.6e-59 230.3 146 71.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.6e-58 229.6 136 75.7
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-58 229.2 132 78.0
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.8e-58 228.8 141 73.0
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.6e-58 228.4 144 70.8
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 4.8e-58 228.0 149 72.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.1e-57 226.9 146 70.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 2.4e-57 225.7 139 74.1
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.4e-57 225.7 146 69.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 6.9e-57 224.2 137 72.3
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 9.0e-57 223.8 141 70.9
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.5e-56 223.0 147 67.3
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.0e-56 222.6 136 74.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.6e-56 222.2 145 68.3
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 5.8e-56 221.1 146 68.5
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.9e-55 218.8 149 67.1
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 4.9e-55 218.0 144 68.8
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.4e-55 217.2 146 67.8
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.1e-54 216.9 135 71.1
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.1e-54 216.9 140 70.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.2e-54 215.3 134 70.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 5.5e-54 214.5 140 69.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.1e-54 214.2 138 68.8
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.2e-53 213.4 139 67.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-53 213.0 138 68.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.6e-53 213.0 138 68.8
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.1e-53 212.6 129 75.2
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.7e-53 212.2 140 72.1
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.7e-53 212.2 129 75.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.6e-53 211.5 129 75.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.0e-52 210.3 139 66.2
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.3e-52 209.9 140 66.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-52 209.9 129 74.4
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.3e-52 209.9 143 62.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.8e-52 209.5 132 70.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.3e-52 209.1 143 69.9
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 3.0e-52 208.8 139 65.5
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.0e-52 208.8 212 52.8
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 5.1e-52 208.0 134 67.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 5.1e-52 208.0 144 68.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 8.7e-52 207.2 136 66.9
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-51 206.8 140 67.1
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.1e-51 206.8 140 70.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.5e-51 206.5 139 69.1
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.9e-51 206.1 141 70.9
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.5e-51 205.7 136 67.6
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 3.3e-51 205.3 133 68.4
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 4.3e-51 204.9 121 77.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 5.6e-51 204.5 140 70.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 7.4e-51 204.1 132 68.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 133 67.7
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.1e-50 202.6 130 68.5
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.8e-50 202.2 130 68.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 6.2e-50 201.1 131 69.5
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.1e-50 200.7 130 70.8
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.1e-50 200.7 134 69.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.1e-50 200.7 134 69.4
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.8e-49 199.5 131 65.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.1e-49 198.7 131 65.6
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.0e-49 198.4 131 65.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 4.0e-49 198.4 127 72.4
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.3e-49 198.0 153 59.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 9.0e-49 197.2 137 65.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.4e-48 195.3 128 68.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.4e-48 195.3 129 65.9
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.4e-48 195.3 128 68.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.4e-48 195.3 129 65.9
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.4e-48 195.3 128 68.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.4e-48 195.3 129 65.9
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 4.5e-48 194.9 143 62.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 5.8e-48 194.5 133 64.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.3e-47 193.4 134 64.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.2e-46 188.7 121 70.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 3.2e-46 188.7 122 67.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.5e-45 185.3 149 55.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.3e-44 182.6 149 53.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.0e-44 182.2 127 67.7
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.7e-43 177.9 143 59.4
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.4e-43 177.6 112 71.4
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.8e-42 175.6 126 63.5
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.5e-40 169.9 213 41.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.3e-39 166.8 122 63.9
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.3e-39 166.8 142 52.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 5.5e-38 161.4 126 62.7
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-34 148.7 144 53.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.2e-31 139.4 141 51.1
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 3.8e-31 138.7 82 79.3
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 3.2e-30 135.6 84 73.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 2.7e-29 132.5 135 45.2
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 2.7e-29 132.5 134 44.0
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.7e-29 132.5 134 44.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 7.9e-29 131.0 139 44.6
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.0e-28 130.6 80 75.0
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 8.8e-28 127.5 149 47.7
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.1e-27 127.1 84 70.2
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-27 126.7 118 50.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-27 125.6 119 49.6
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-26 123.6 119 48.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.3e-26 123.6 97 59.8
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 6.9e-25 117.9 136 44.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-24 117.1 106 51.9
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.0e-23 111.7 163 39.3
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.4e-22 110.2 134 42.5
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 4.2e-22 108.6 95 52.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.6e-21 105.5 134 39.6
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 9.7e-19 97.4 65 63.1
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 4.8e-18 95.1 141 33.3
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.8e-17 93.2 86 51.2
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.0e-16 89.7 137 31.4
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.8e-15 85.5 59 64.4
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.5e-15 84.7 59 64.4
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.8e-12 74.3 106 34.9
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-11 72.4 72 47.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 2.9e-07 59.3 36 75.0
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 1.1e-06 57.4 74 39.2


User provided reference genes

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