Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 9.7e-209 729.9 379 100.0
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.1e-108 397.5 374 59.4
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 7.4e-108 394.8 372 59.9
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 2.8e-107 392.9 382 59.7
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 1.1e-106 391.0 373 59.8
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 1.0e-101 374.4 377 57.3
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.4e-101 374.0 371 59.6
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 9.7e-100 367.9 380 57.4
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 8.2e-99 364.8 372 56.2
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 3.1e-98 362.8 379 56.5
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 3.8e-96 355.9 411 55.0
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.4e-93 347.4 371 56.1
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 1.4e-93 347.4 375 55.7
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.6e-92 343.2 371 55.0
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 2.6e-92 343.2 388 54.6
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 3.3e-92 342.8 382 54.5
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 9.7e-92 341.3 371 54.4
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 2.8e-91 339.7 372 53.8
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 4.8e-91 339.0 375 52.5
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 8.2e-91 338.2 373 53.6
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 4.5e-89 332.4 383 50.9
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 5.9e-89 332.0 379 53.3
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 1.4e-87 327.4 402 50.7
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 1.4e-87 327.4 378 52.4
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.9e-87 327.0 385 51.9
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 3.2e-87 326.2 379 52.8
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 4.2e-87 325.9 378 51.6
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 5.5e-87 325.5 379 51.2
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 3.0e-85 319.7 382 50.3
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 8.8e-85 318.2 372 51.3
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 1.5e-84 317.4 375 54.1
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 3.3e-84 316.2 371 50.7
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 3.3e-84 316.2 372 48.7
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 7.4e-84 315.1 384 50.0
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 1.3e-83 314.3 377 51.7
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 2.8e-83 313.2 379 50.4
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 4.8e-83 312.4 457 44.9
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 6.3e-83 312.0 369 49.9
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 3.1e-82 309.7 393 48.3
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.6e-81 307.4 382 47.6
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 2.0e-81 307.0 381 49.1
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 2.0e-81 307.0 384 48.2
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 4.5e-81 305.8 371 50.1
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 1.0e-80 304.7 373 51.2
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 1.0e-80 304.7 377 46.7
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.3e-80 304.3 370 51.6
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 2.2e-80 303.5 377 50.9
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 2.2e-80 303.5 378 49.5
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 2.2e-80 303.5 379 49.3
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 2.9e-80 303.1 374 50.5
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 6.5e-80 302.0 380 48.7
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 8.5e-80 301.6 253 63.6
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 3.2e-79 299.7 377 48.0
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 7.2e-79 298.5 377 48.0
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 9.4e-79 298.1 383 49.3
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 1.6e-78 297.4 377 47.7
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 6.1e-78 295.4 378 47.1
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 1.0e-77 294.7 372 51.3
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 1.4e-77 294.3 379 48.3
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 3.0e-77 293.1 416 45.9
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 3.0e-77 293.1 371 49.3
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 4.0e-77 292.7 379 48.3
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 4.0e-77 292.7 386 48.7
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 3.3e-76 289.7 375 47.2
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 5.7e-76 288.9 378 47.1
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 7.5e-76 288.5 253 62.1
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 3.7e-75 286.2 382 47.9
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 2.4e-74 283.5 382 47.6
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 3.8e-72 276.2 291 56.0
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 1.6e-70 270.8 389 44.7
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 2.7e-70 270.0 331 49.5
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 6.1e-70 268.9 379 47.8
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 3.0e-69 266.5 232 60.8
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 2.6e-68 263.5 234 61.1
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 4.4e-68 262.7 382 47.4
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.6e-65 254.2 248 56.9
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.0e-64 251.5 379 45.1
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 1.9e-63 247.3 231 57.1
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.6e-62 244.2 230 60.9
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 2.8e-62 243.4 289 50.9
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 2.3e-61 240.4 371 44.7
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 2.3e-61 240.4 473 39.5
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 5.7e-60 235.7 379 41.2
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 1.7e-59 234.2 281 48.0
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 2.8e-59 233.4 351 43.0
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 2.8e-59 233.4 258 52.3
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 3.8e-56 223.0 279 47.3
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 1.1e-55 221.5 246 49.6
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 6.1e-54 215.7 392 38.5
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 4.0e-53 213.0 309 42.7
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.0e-52 210.7 390 38.5
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 2.9e-51 206.8 249 49.0
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 1.4e-50 204.5 147 71.4
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 4.1e-50 203.0 244 51.6
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 7.0e-50 202.2 246 48.4
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 1.2e-49 201.4 281 47.3
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.5e-47 193.7 230 51.3
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 8.9e-45 185.3 274 43.4
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 2.2e-43 180.6 274 43.1
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 6.4e-43 179.1 396 37.1
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 9.2e-42 175.3 229 45.0
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.0e-40 171.8 233 43.3
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 1.2e-38 164.9 381 33.9
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 6.2e-38 162.5 258 41.9
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 8.9e-37 158.7 389 33.4
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 6.6e-32 142.5 291 37.5
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 1.1e-31 141.7 378 33.1
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 1.1e-29 135.2 156 51.3
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 6.8e-29 132.5 153 54.2
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 6.8e-29 132.5 153 54.2
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 8.9e-29 132.1 236 42.4
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 3.2e-26 123.6 207 44.0
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 7.1e-26 122.5 235 36.6
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 2.8e-22 110.5 164 43.3
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 2.4e-21 107.5 191 41.9
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.9e-18 97.8 94 58.5
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 2.1e-17 94.4 117 47.0
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.7e-17 94.0 64 71.9
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.7e-16 91.3 279 29.7
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 1.1e-15 88.6 62 74.2
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.1e-13 82.0 63 71.4
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 6.0e-09 66.2 72 54.2
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 1.8e-08 64.7 92 42.4
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 6.7e-08 62.8 48 62.5
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 6.7e-08 62.8 48 62.5


User provided reference genes

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