Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.2e-121 439.9 230 100.0
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.8e-109 399.4 227 93.0
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 5.3e-109 397.9 233 91.0
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.6e-108 395.6 231 90.9
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 3.4e-108 395.2 226 91.2
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 1.0e-107 393.7 229 90.8
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.3e-107 393.3 223 90.6
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.7e-107 392.9 232 90.9
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.7e-107 392.9 228 91.2
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 2.9e-107 392.1 224 90.6
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 5.0e-107 391.3 230 90.4
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.0e-107 391.3 230 90.4
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 8.5e-107 390.6 224 92.0
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.1e-106 390.2 233 90.1
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.4e-106 389.8 232 87.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.4e-106 389.8 228 91.2
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.5e-106 389.0 227 89.4
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 4.2e-106 388.3 224 92.0
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.2e-106 388.3 227 89.0
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 4.2e-106 388.3 231 90.9
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 7.2e-106 387.5 225 88.9
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 9.4e-106 387.1 231 90.0
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.6e-105 386.3 227 89.0
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.6e-105 386.3 227 89.4
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.6e-105 386.3 230 88.7
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 2.1e-105 386.0 236 88.1
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.6e-105 385.2 227 90.3
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 4.6e-105 384.8 235 86.4
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 7.9e-105 384.0 232 88.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.9e-105 384.0 225 88.4
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 7.9e-105 384.0 235 87.2
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 7.9e-105 384.0 226 87.2
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.0e-104 383.6 227 89.9
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.0e-104 383.6 227 89.9
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.4e-104 383.3 229 87.3
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.8e-104 382.9 227 89.4
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 2.3e-104 382.5 227 89.4
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 2.3e-104 382.5 227 87.7
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 3.0e-104 382.1 226 88.1
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.0e-104 382.1 226 87.6
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 3.9e-104 381.7 228 86.8
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 86.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 8.8e-104 380.6 230 86.5
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.1e-103 380.2 231 89.2
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.5e-103 379.8 226 87.6
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 1.5e-103 379.8 229 87.8
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 231 89.2
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.9e-103 379.4 227 88.1
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.9e-103 379.4 230 86.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.5e-103 379.0 235 86.8
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 3.3e-103 378.6 227 85.9
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 4.3e-103 378.3 226 87.2
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.3e-103 378.3 229 87.8
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.7e-103 377.9 227 89.0
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 9.7e-103 377.1 228 88.2
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 9.7e-103 377.1 219 88.1
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 9.7e-103 377.1 205 94.6
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.3e-102 376.7 233 87.1
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.3e-102 376.7 226 88.1
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 220 91.4
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.7e-102 376.3 226 87.2
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.7e-102 376.3 228 86.0
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.2e-102 375.9 226 85.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.8e-102 375.6 214 90.7
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.8e-102 375.6 228 86.4
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.8e-102 375.6 226 87.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 3.7e-102 375.2 226 87.2
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.7e-102 375.2 230 88.7
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 6.3e-102 374.4 208 91.8
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 6.3e-102 374.4 227 85.9
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 226 86.3
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 8.2e-102 374.0 226 86.3
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.1e-101 373.6 226 86.3
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 227 85.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.1e-101 373.6 227 85.9
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 229 84.7
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 226 85.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.8e-101 372.9 228 85.1
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.4e-101 372.5 210 91.9
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.4e-101 372.5 229 85.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 2.4e-101 372.5 228 88.2
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.1e-101 372.1 254 79.1
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 4.1e-101 371.7 228 85.1
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.1e-101 371.7 210 91.0
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.3e-101 371.3 226 87.2
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 6.9e-101 370.9 230 85.2
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.1e-101 370.5 226 86.7
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 9.1e-101 370.5 229 86.0
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 9.1e-101 370.5 210 91.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 227 85.0
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 229 85.6
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 2.6e-100 369.0 228 84.2
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 3.4e-100 368.6 226 86.3
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.4e-100 368.6 227 85.0
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 4.5e-100 368.2 210 89.5
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.5e-100 368.2 225 86.7
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 5.9e-100 367.9 210 89.5
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 5.9e-100 367.9 210 89.5
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 5.9e-100 367.9 210 89.5
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 7.7e-100 367.5 228 84.6
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.3e-99 366.7 210 89.0
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.0e-99 364.8 232 83.2
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.1e-98 363.6 227 84.6
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.5e-98 361.3 226 83.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 9.4e-98 360.5 224 83.5
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 9.4e-98 360.5 226 84.1
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.2e-97 360.1 223 83.4
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.2e-97 360.1 219 86.3
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.6e-97 359.8 306 68.3
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 2.1e-97 359.4 217 84.8
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 3.9e-96 355.1 210 86.7
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.1e-93 345.5 222 81.5
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 3.2e-90 335.5 231 79.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.0e-88 330.5 187 92.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 8.2e-86 320.9 207 79.2
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 5.3e-85 318.2 215 75.8
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.7e-83 313.2 214 74.8
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.6e-81 305.4 191 86.9
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.6e-79 299.3 179 89.9
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.0e-76 289.7 194 82.5
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 4.5e-76 288.5 215 69.8
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.5e-74 283.5 163 92.6
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 7.2e-74 281.2 156 93.6
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.4e-74 280.8 159 91.8
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.6e-73 280.0 156 92.3
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 4.7e-73 278.5 156 92.3
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.0e-72 277.3 166 88.0
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.0e-72 277.3 177 83.6
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-69 265.0 184 73.9
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 9.1e-69 264.2 161 87.0
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.0e-67 260.8 180 77.8
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 9.2e-61 237.7 157 78.3
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.3e-54 217.2 124 90.3
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 7.0e-53 211.5 161 72.7
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.6e-44 182.2 110 88.2
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.0e-43 181.0 103 93.2
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.9e-42 176.8 101 94.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.3e-35 154.1 156 58.3
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 9.5e-34 147.9 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 6.0e-28 128.6 77 79.2
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.6e-25 120.6 206 38.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.9e-23 111.3 57 94.7
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 9.9e-23 111.3 81 71.6
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.3e-18 96.3 64 78.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 8.1e-17 91.7 62 74.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 9.9e-15 84.7 60 71.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 3.0e-11 73.2 54 66.7


User provided reference genes

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