Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.1e-119 433.3 215 100.0
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.0e-78 296.2 195 75.4
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 8.5e-77 290.8 195 73.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.1e-76 290.4 195 74.4
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 4.2e-76 288.5 195 74.9
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 2.1e-75 286.2 194 72.7
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.1e-75 284.6 194 72.2
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.4e-74 283.5 186 75.3
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 5.2e-74 281.6 186 75.8
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.8e-74 281.2 194 71.1
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.5e-73 280.0 186 75.3
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.4e-73 278.9 192 75.0
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.4e-71 271.6 188 70.7
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 9.1e-71 270.8 198 67.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.2e-70 270.4 189 73.5
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-70 270.0 190 70.0
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.6e-70 270.0 201 68.2
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.7e-70 269.2 192 69.8
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.7e-70 269.2 192 69.8
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.0e-69 267.3 189 71.4
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.0e-69 267.3 189 69.3
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.3e-69 266.9 203 66.5
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.3e-69 266.9 201 67.2
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.7e-69 266.5 188 71.8
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.9e-69 265.8 200 66.0
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.8e-69 265.4 201 66.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.8e-69 265.4 190 68.9
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 8.5e-69 264.2 189 68.3
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 8.5e-69 264.2 191 69.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.1e-68 263.8 192 68.2
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.5e-68 263.5 189 68.3
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.5e-68 263.5 192 68.8
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.5e-68 263.5 189 70.9
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 4.2e-68 261.9 190 66.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 4.2e-68 261.9 192 70.3
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 7.2e-68 261.2 192 69.3
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 7.2e-68 261.2 192 67.7
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 9.4e-68 260.8 192 67.7
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.2e-67 260.4 204 65.7
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.2e-67 260.4 213 63.8
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 1.6e-67 260.0 190 67.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 1.6e-67 260.0 190 67.4
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.6e-67 260.0 197 65.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.1e-67 259.6 156 80.1
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.1e-67 259.6 198 66.7
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.7e-67 259.2 193 67.9
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.7e-67 258.5 188 67.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 6.1e-67 258.1 189 66.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 6.1e-67 258.1 184 70.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 6.1e-67 258.1 197 67.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 8.0e-67 257.7 193 68.4
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.4e-66 256.9 189 67.2
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.4e-66 256.9 191 69.1
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.8e-66 256.5 199 63.8
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.3e-66 256.1 204 64.7
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 4.0e-66 255.4 206 62.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 5.2e-66 255.0 188 66.5
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 5.2e-66 255.0 206 63.1
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 5.2e-66 255.0 185 69.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 6.8e-66 254.6 194 64.4
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.8e-66 254.6 189 68.8
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 8.8e-66 254.2 187 68.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.2e-65 253.8 189 65.6
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.6e-65 252.7 182 71.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.6e-65 252.7 190 66.3
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 3.4e-65 252.3 198 64.6
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.5e-65 251.1 192 65.6
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 7.5e-65 251.1 192 65.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 7.5e-65 251.1 189 66.7
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 9.8e-65 250.8 188 67.0
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.3e-64 250.4 197 66.0
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.3e-64 250.4 188 64.4
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.7e-64 250.0 189 66.7
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.7e-64 250.0 189 66.7
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.7e-64 250.0 184 68.5
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.2e-64 249.6 192 65.6
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.2e-64 249.6 185 67.6
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 8.3e-64 247.7 186 66.7
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.4e-63 246.9 190 65.3
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.1e-63 245.7 183 66.7
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.1e-63 245.4 191 61.8
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.4e-63 245.0 191 63.9
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 9.2e-63 244.2 185 66.5
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.2e-62 243.8 189 66.1
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.6e-62 243.4 192 63.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.0e-62 243.0 189 69.3
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 2.7e-62 242.7 188 63.8
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 2.7e-62 242.7 188 63.8
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 2.7e-62 242.7 188 63.8
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 4.5e-62 241.9 192 62.5
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.0e-61 240.7 184 64.1
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.0e-61 240.7 189 67.2
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.9e-61 239.2 175 66.3
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.0e-61 238.4 188 67.6
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 8.6e-61 237.7 185 65.4
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.7e-59 231.9 182 62.6
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 8.0e-59 231.1 189 63.5
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 8.0e-59 231.1 195 63.1
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.0e-58 229.2 194 62.9
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.2e-57 227.3 187 61.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 5.9e-54 214.9 156 69.9
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 8.6e-53 211.1 123 79.7
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.1e-52 210.7 176 59.1
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.2e-51 207.2 149 65.8
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.1e-51 206.5 189 58.7
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 8.0e-51 204.5 191 55.5
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.2e-49 200.7 184 58.7
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.2e-49 200.7 180 52.8
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.1e-47 194.1 194 53.1
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.4e-47 193.7 153 60.8
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.5e-46 189.1 187 51.9
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.6e-45 184.9 123 69.9
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.6e-45 184.5 122 69.7
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.1e-44 184.1 129 72.1
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.9e-44 183.3 182 53.3
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 8.1e-43 177.9 152 57.9
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.4e-42 177.2 146 59.6
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 9.8e-41 171.0 146 54.1
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.0e-37 159.5 125 64.8
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.5e-36 156.4 129 55.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.8e-35 152.9 92 78.3
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 6.8e-34 148.3 188 47.3
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 3.2e-31 139.4 144 48.6
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 7.1e-31 138.3 134 50.0
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 6.0e-30 135.2 84 73.8
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 2.5e-28 129.8 189 43.9
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 2.5e-28 129.8 189 43.9
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.8e-25 118.6 149 43.0
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 8.4e-24 114.8 183 38.3
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.1e-18 97.8 87 62.1
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-18 97.4 149 37.6
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.4e-18 97.4 149 37.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.4e-18 96.7 51 86.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 3.4e-17 92.8 59 71.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 6.4e-16 88.6 111 36.9
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.8e-08 62.8 55 52.7


User provided reference genes

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