Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.3e-235 818.1 460 100.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.2e-199 699.1 459 85.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.7e-197 692.2 461 85.2
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.6e-197 691.8 461 85.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.8e-196 689.5 461 85.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 9.0e-193 677.2 461 84.4
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.5e-192 676.4 461 83.7
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.0e-192 676.0 461 83.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.0e-191 671.4 461 83.5
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.1e-190 670.2 459 83.4
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.4e-190 669.8 459 82.1
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.9e-190 669.5 461 83.3
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.8e-186 655.6 492 78.3
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.8e-186 655.6 461 81.1
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 8.2e-186 654.1 463 81.4
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.1e-185 653.7 463 81.4
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.8e-185 652.9 459 80.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.4e-185 652.5 459 81.9
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 4.1e-185 651.7 463 81.2
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 4.1e-185 651.7 463 80.8
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.1e-185 651.7 461 78.7
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.5e-184 649.8 459 81.7
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.7e-184 647.5 461 78.5
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.5e-183 644.0 460 79.6
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.9e-182 642.9 463 81.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.5e-182 642.5 460 79.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.5e-182 642.5 483 77.2
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.2e-182 642.1 462 80.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.2e-182 641.0 461 81.8
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.1e-181 639.4 459 78.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 80.3
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.0e-180 637.1 465 79.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.4e-180 636.7 463 79.7
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.9e-180 635.2 463 80.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.9e-180 635.2 459 78.6
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 8.8e-180 634.0 461 77.4
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 8.8e-180 634.0 461 78.5
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.5e-179 633.3 463 78.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 2.6e-179 632.5 475 77.7
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 7.4e-179 630.9 458 77.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.7e-178 629.8 461 78.3
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 2.2e-178 629.4 464 78.9
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.8e-178 629.0 463 78.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.8e-178 629.0 466 78.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.8e-175 618.6 466 77.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 6.5e-175 617.8 462 78.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 8.5e-175 617.5 460 78.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.5e-174 616.7 464 78.4
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.5e-174 615.9 465 71.2
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.5e-174 615.9 464 78.0
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 3.2e-174 615.5 463 76.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 9.4e-174 614.0 460 77.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.1e-173 612.8 463 76.7
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-172 610.1 463 76.2
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.0e-172 609.0 460 76.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 8.8e-172 607.4 505 66.7
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.0e-171 606.3 460 77.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.6e-171 605.9 463 76.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 4.4e-171 605.1 460 70.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 4.4e-171 605.1 460 70.4
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 7.5e-171 604.4 460 77.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.3e-170 603.6 463 76.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.3e-170 603.6 463 75.4
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.7e-170 603.2 463 74.9
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.8e-170 602.4 463 74.9
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.8e-169 599.7 442 79.4
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.8e-169 599.7 459 75.2
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-169 598.6 463 74.3
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.3e-169 598.2 463 76.7
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 7.0e-169 597.8 459 75.2
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 7.0e-169 597.8 461 76.4
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 9.1e-169 597.4 463 75.6
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 9.1e-169 597.4 463 74.7
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 9.1e-169 597.4 459 75.4
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 2.7e-168 595.9 460 76.3
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.3e-167 593.6 455 75.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 5.0e-167 591.7 459 74.3
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 6.5e-167 591.3 459 72.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.5e-167 591.3 462 73.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.5e-163 580.1 463 74.1
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.6e-163 579.3 465 68.2
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.5e-163 577.8 463 73.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.1e-161 572.4 463 73.9
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.7e-160 569.3 463 72.4
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.2e-159 566.2 463 72.1
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.9e-159 565.8 461 71.6
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 4.2e-158 562.0 456 71.9
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 2.1e-157 559.7 466 70.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.6e-157 558.9 463 71.1
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.0e-156 557.4 456 71.5
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-156 557.4 552 63.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.8e-156 556.6 456 71.5
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.8e-156 556.6 456 71.3
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.3e-156 556.2 461 67.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.1e-153 545.4 387 71.8
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 7.0e-153 544.7 462 64.9
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.5e-152 542.0 462 70.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.3e-151 540.4 462 69.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.3e-151 540.4 387 71.1
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.7e-151 540.0 389 71.2
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.3e-150 535.4 463 62.2
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.6e-149 533.5 389 71.7
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.8e-148 530.0 461 68.5
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.4e-147 525.8 463 68.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 5.7e-147 525.0 459 69.1
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.2e-144 517.3 464 66.2
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.7e-144 516.2 389 69.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 3.5e-144 515.8 495 66.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.6e-144 515.4 410 76.3
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 8.3e-138 494.6 384 76.0
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.1e-132 477.6 461 65.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.2e-131 474.2 468 62.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 5.8e-115 418.7 462 56.9
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.3e-111 407.5 368 61.1
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.3e-109 401.0 466 51.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 4.8e-101 372.5 334 62.6
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.9e-98 363.2 462 48.7
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.9e-98 363.2 301 65.1
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 6.9e-76 288.9 286 65.7
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.5e-66 255.8 399 39.3
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.0e-63 248.4 458 41.9
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 7.2e-57 225.7 189 68.8
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.1e-56 222.6 242 51.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 9.4e-49 198.7 505 37.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.7e-45 188.0 150 68.7
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.8e-44 184.5 169 62.1
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 3.1e-44 183.7 397 31.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-42 178.7 123 74.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.4e-38 163.7 135 63.0
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 5.4e-36 156.4 508 33.1
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-33 148.7 121 66.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.0e-31 140.6 156 52.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.9e-26 123.6 218 38.1
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 2.6e-22 110.9 90 65.6
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.1e-20 105.5 68 80.9
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.6e-19 100.1 101 83.2
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.5e-17 94.4 55 90.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 4.3e-17 93.6 84 60.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 3.2e-12 77.4 111 45.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.5e-11 73.9 59 64.4
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.0e-10 70.9 60 58.3
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.5e-09 68.6 61 57.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.9e-09 68.2 49 81.6
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.5e-09 67.8 175 33.1
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 3.3e-09 67.4 406 22.2
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 4.3e-09 67.0 67 50.7
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.2e-08 65.5 62 54.8
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.2e-08 65.5 37 91.9
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.8e-08 64.3 392 23.0
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 3.6e-08 63.9 407 21.6
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.4e-07 61.2 406 21.4
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 3.1e-07 60.8 413 21.5
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 8.9e-07 59.3 408 20.8
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 1.2e-06 58.9 271 23.6
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 1.2e-06 58.9 404 20.8
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.2e-06 58.9 404 20.8
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 1.5e-06 58.5 406 21.7
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.4e-06 57.4 401 19.7
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.4e-06 57.0 63 55.6
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 4.4e-06 57.0 406 20.9
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 5.8e-06 56.6 90 43.3
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 7.6e-06 56.2 250 24.0
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 9.9e-06 55.8 246 25.6


User provided reference genes

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