Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 0.0e+00 1201.8 621 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.9e-249 865.9 594 73.9
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-240 836.6 605 72.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.6e-240 834.7 593 71.8
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.9e-239 831.6 600 72.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.6e-237 826.2 613 70.1
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 7.1e-233 810.8 596 68.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 9.2e-233 810.4 593 68.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 7.8e-232 807.4 607 67.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.9e-231 805.1 595 69.7
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.5e-230 803.1 608 67.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.5e-230 803.1 595 69.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.5e-230 802.4 593 69.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.7e-229 798.1 592 69.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 8.1e-229 797.3 603 67.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 8.1e-229 797.3 615 65.9
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.2e-228 794.7 605 68.8
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.6e-227 792.3 605 67.4
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 7.6e-227 790.8 606 65.8
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.3e-223 780.0 609 65.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.3e-222 775.4 606 66.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.2e-221 771.2 576 68.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-218 763.5 606 66.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.2e-218 762.7 602 64.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.3e-217 757.3 604 64.6
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.6e-216 756.5 606 66.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.7e-216 755.7 604 64.6
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.6e-216 755.0 604 64.6
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.0e-215 753.8 608 64.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.0e-215 753.8 606 67.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.0e-215 753.8 606 65.0
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-215 752.3 615 66.0
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.9e-214 749.6 603 64.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 7.4e-214 747.7 630 62.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.8e-213 745.7 606 66.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 4.8e-213 745.0 537 70.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 6.2e-213 744.6 604 63.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 8.1e-213 744.2 593 64.9
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.1e-212 742.3 589 64.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.2e-210 736.1 522 70.3
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.9e-210 735.7 590 64.6
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.9e-210 734.9 593 63.6
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.9e-209 733.0 594 65.5
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 4.2e-209 731.9 583 64.3
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.1e-208 729.6 591 65.1
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.7e-208 729.2 608 64.0
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.7e-208 729.2 516 69.8
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.0e-207 727.2 580 63.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.0e-207 725.7 592 64.0
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 8.7e-207 724.2 514 70.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.7e-207 724.2 536 68.3
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.8e-205 718.4 607 61.3
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 8.2e-205 717.6 599 61.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.5e-203 713.4 602 60.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.0e-203 713.0 591 60.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.6e-203 712.6 606 62.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 5.8e-203 711.4 656 58.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.8e-202 708.8 603 60.0
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 4.9e-202 708.4 599 60.3
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.5e-201 706.1 602 61.3
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.2e-201 705.7 602 62.5
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.7e-200 702.6 603 59.9
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 4.6e-200 701.8 602 61.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.8e-199 699.9 528 67.4
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 3.0e-199 699.1 797 49.9
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.9e-199 698.7 613 59.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.1e-199 698.4 618 59.1
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 6.7e-199 698.0 613 59.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.1e-198 697.2 623 57.1
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.5e-198 696.8 619 59.1
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.5e-198 696.0 604 59.6
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.5e-198 696.0 615 59.2
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 3.3e-198 695.7 616 59.1
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.8e-197 691.8 609 59.3
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 4.8e-197 691.8 606 59.4
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.1e-196 690.6 590 60.3
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.4e-196 690.3 593 60.9
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 5.3e-196 688.3 613 59.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.6e-195 686.0 631 60.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.0e-194 681.8 583 60.9
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.5e-193 679.5 604 60.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 3.9e-191 672.2 581 60.2
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.5e-190 669.5 553 64.2
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.3e-190 668.7 582 60.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.7e-186 656.8 524 63.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.0e-183 647.5 620 56.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 5.0e-178 628.6 556 59.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.3e-174 615.9 609 54.4
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.8e-172 610.1 534 59.7
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.4e-172 609.8 492 62.0
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.7e-171 604.7 605 54.9
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.0e-162 577.8 618 51.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.5e-161 573.2 356 78.9
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.2e-157 560.1 473 63.0
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-156 557.4 643 49.8
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 7.7e-155 551.6 621 50.9
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.1e-153 547.7 534 52.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.8e-126 455.7 440 53.4
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.1e-119 433.3 380 57.6
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.6e-115 421.0 304 69.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.0e-115 419.1 540 43.3
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.5e-113 414.5 505 44.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.5e-113 413.7 332 63.9
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.4e-111 407.9 540 43.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.0e-111 405.2 543 41.3
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.3e-87 326.2 290 57.9
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.1e-82 309.7 409 47.7
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 7.4e-81 305.8 216 72.2
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.2e-77 294.3 216 71.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-76 291.6 302 53.0
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 6.3e-72 276.2 181 77.9
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.0e-69 266.5 340 40.3
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.2e-67 261.9 289 46.4
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 6.7e-66 256.1 363 35.5
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.5e-52 209.9 170 61.8
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 9.4e-44 182.6 112 77.7
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.4e-41 173.7 123 63.4
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.6e-35 154.1 249 41.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.0e-34 152.5 111 68.5
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.0e-34 151.0 122 64.8
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-31 142.5 114 63.2
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.3e-26 124.8 100 61.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.2e-25 122.5 565 21.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-25 122.1 129 48.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.4e-25 120.9 74 78.4
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.1e-23 115.9 80 66.2
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.9e-23 115.2 371 27.2
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 7.0e-23 113.2 80 65.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.7e-22 111.3 82 63.4
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-21 109.0 159 38.4
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.7e-21 108.6 98 51.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 3.1e-18 97.8 175 39.4
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.2e-18 97.1 123 44.7
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-15 89.0 104 45.2
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 9.2e-15 86.3 85 50.6
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 6.0e-14 83.6 58 62.1
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.3e-12 77.8 77 50.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 3.1e-10 71.2 58 62.1
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 4.0e-10 70.9 138 36.2
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 8.9e-10 69.7 206 25.7
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 5.4e-07 60.5 40 65.0
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 1.6e-06 58.9 415 22.9


User provided reference genes

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