Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06810 Coffea canephora HOM05D006374 ORTHO05D006349 2.1e-48 195.3 94 100.0
Cc01_g06860 Coffea canephora HOM05D006374 ORTHO05D006349 6.9e-47 190.3 94 96.8
Nitab4.5_0004577g0040 Nicotiana tabacum HOM05D006374 ORTHO05D006349 6.0e-27 124.0 83 65.1
Oeu025935.3 Olea europaea HOM05D001292 ORTHO05D006349 8.7e-26 120.2 94 56.4
Dinv11161 Davidia involucrata HOM05D006374 ORTHO05D006349 1.5e-25 119.4 83 65.1
Solyc11g072220.2 Solanum lycopersicum HOM05D006374 ORTHO05D006349 3.3e-25 118.2 90 58.9
PGSC0003DMG400027413 Solanum tuberosum HOM05D006374 ORTHO05D006349 5.6e-25 117.5 90 58.9
CSS0045232 Camellia sinensis var. sinensis HOM05D006374 ORTHO05D006349 7.4e-25 117.1 83 62.7
CAN.G328.5 Capsicum annuum HOM05D006374 ORTHO05D006349 9.6e-25 116.7 93 55.9
Sopen02g012480 Solanum pennellii HOM05D006374 ORTHO05D006349 1.3e-24 116.3 93 54.8
PGSC0003DMG401023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 1.3e-24 116.3 93 55.9
PGSC0003DMG402023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 1.3e-24 116.3 93 55.9
Sopen11g029890 Solanum pennellii HOM05D006374 ORTHO05D006349 1.6e-24 115.9 90 57.8
ECA232G1265 Erigeron canadensis HOM05D006374 ORTHO05D006349 2.8e-24 115.2 83 60.2
Peaxi162Scf00234g00413 Petunia axillaris HOM05D006374 ORTHO05D006349 2.8e-24 115.2 83 60.2
MSTRG.20819 Avicennia marina HOM05D006374 ORTHO05D006349 4.8e-24 114.4 91 54.9
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 8.2e-24 113.6 87 56.3
Nitab4.5_0000205g0050 Nicotiana tabacum HOM05D006374 ORTHO05D006349 1.4e-23 112.8 91 53.8
Nitab4.5_0003471g0010 Nicotiana tabacum HOM05D006374 ORTHO05D006349 2.4e-23 112.1 89 55.1
Ciclev10021330m.g Citrus clementina HOM05D006374 ORTHO05D006349 5.3e-23 110.9 83 61.4
Medtr3g075090 Medicago truncatula HOM05D006374 ORTHO05D006349 6.9e-23 110.5 80 65.0
Oeu032041.1 Olea europaea HOM05D001292 ORTHO05D006349 6.9e-23 110.5 94 53.2
Migut.D00695 Erythranthe guttata HOM05D006374 ORTHO05D006349 9.0e-23 110.2 89 53.9
Migut.D00697 Erythranthe guttata HOM05D006374 ORTHO05D006349 9.0e-23 110.2 92 48.9
Atru.chr9.1014 Acer truncatum HOM05D006374 ORTHO05D006349 1.2e-22 109.8 87 58.6
Psat5g141920 Pisum sativum HOM05D006374 ORTHO05D006349 3.4e-22 108.2 80 63.8
GSVIVG01007539001 Vitis vinifera HOM05D006374 ORTHO05D006349 3.4e-22 108.2 83 59.0
Ca_16088_v3 Cicer arietinum L. HOM05D006374 ORTHO05D006349 4.5e-22 107.8 80 65.0
Lsat_1_v5_gn_9_14500 Lactuca sativa HOM05D006374 ORTHO05D006349 5.8e-22 107.5 80 57.5
arahy.Tifrunner.gnm1.ann1.EEZ80W Arachis hypogaea HOM05D006374 ORTHO05D006349 7.6e-22 107.1 84 57.1
Glyma.04G193100 Glycine max HOM05D006374 ORTHO05D006349 7.6e-22 107.1 84 54.8
Nn4g22459 Nelumbo nucifera HOM05D006374 ORTHO05D006349 1.0e-21 106.7 83 56.6
Prupe.5G156800 Prunus persica HOM05D006374 ORTHO05D006349 1.3e-21 106.3 83 59.0
MSTRG.18477 Avicennia marina HOM05D006374 ORTHO05D006349 1.7e-21 105.9 92 48.9
Duzib205G1366 Durio zibethinus HOM05D006374 ORTHO05D006349 1.7e-21 105.9 82 56.1
CiPaw.11G012000 Carya illinoinensis HOM05D006374 ORTHO05D006349 2.9e-21 105.1 85 57.6
Lj1g0028093 Lotus japonicus HOM05D006374 ORTHO05D006349 2.9e-21 105.1 84 59.5
RcHm_v2.0_Chr7g0191071 Rosa chinensis HOM05D006374 ORTHO05D006349 2.9e-21 105.1 83 56.6
TAR374G0798 Trochodendron aralioides HOM05D006374 ORTHO05D006349 2.9e-21 105.1 84 56.0
EL10Ac3g05470 Beta vulgaris HOM05D006374 ORTHO05D006349 4.9e-21 104.4 77 59.7
Gohir.A07G051500 Gossypium hirsutum HOM05D006374 ORTHO05D006349 6.5e-21 104.0 79 55.7
Phvul.009G168700 Phaseolus vulgaris HOM05D006374 ORTHO05D006349 6.5e-21 104.0 84 54.8
MD14G1163400 Malus domestica HOM05D006374 ORTHO05D006349 8.4e-21 103.6 81 60.5
VMungo1309G0655 Vigna mungo HOM05D006374 ORTHO05D006349 8.4e-21 103.6 84 54.8
ATR0824G075 Amborella trichopoda HOM05D001292 ORTHO05D006349 1.1e-20 103.2 82 53.7
FvH4_5g07530 Fragaria vesca HOM05D006374 ORTHO05D006349 1.1e-20 103.2 83 54.2
PGR083G0950 Punica granatum HOM05D006374 ORTHO05D006349 1.1e-20 103.2 80 53.8
Rhsim08G0189000 Rhododendron simsii HOM05D006374 ORTHO05D006349 1.1e-20 103.2 83 55.4
Gohir.D13G208100 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.4e-20 102.8 83 55.4
Gorai.013G237200 Gossypium raimondii HOM05D006374 ORTHO05D006349 1.4e-20 102.8 83 55.4
Cpa.g.sc4.71 Carica papaya HOM05D006374 ORTHO05D006349 2.5e-20 102.1 83 59.0
FAN04G3207 Fragaria x ananassa HOM05D006374 ORTHO05D006349 2.5e-20 102.1 83 53.0
FAN08G0738 Fragaria x ananassa HOM05D006374 ORTHO05D006349 2.5e-20 102.1 83 53.0
Gohir.D07G055900 Gossypium hirsutum HOM05D006374 ORTHO05D006349 2.5e-20 102.1 79 54.4
CANSAT80G0307 Cannabis sativa HOM05D006374 ORTHO05D006349 3.2e-20 101.7 86 57.0
Cfa018891 Carpinus fangiana HOM05D006374 ORTHO05D006349 3.2e-20 101.7 81 56.8
FAN18G3707 Fragaria x ananassa HOM05D006374 ORTHO05D006349 4.2e-20 101.3 83 54.2
Sabra10G0138300 Salix brachista HOM05D006374 ORTHO05D006349 5.5e-20 100.9 87 54.0
arahy.Tifrunner.gnm1.ann1.6C93RA Arachis hypogaea HOM05D006374 ORTHO05D006349 7.1e-20 100.5 84 54.8
arahy.Tifrunner.gnm1.ann1.RTUG1E Arachis hypogaea HOM05D006374 ORTHO05D006349 7.1e-20 100.5 84 56.0
PSO384G0777 Papaver somniferum HOM05D006374 ORTHO05D006349 7.1e-20 100.5 78 55.1
Sabra15G0112900 Salix brachista HOM05D006374 ORTHO05D006349 7.1e-20 100.5 86 54.7
Cc03_g12860 Coffea canephora HOM05D006374 ORTHO05D006349 9.3e-20 100.1 91 53.8
PSO339G5603 Papaver somniferum HOM05D006374 ORTHO05D006349 9.3e-20 100.1 78 53.8
FvH4_3g25530 Fragaria vesca HOM05D006374 ORTHO05D006349 1.2e-19 99.8 83 53.0
AUR62017054 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.7e-19 98.6 81 54.3
Eucgr.B00120 Eucalyptus grandis HOM05D006374 ORTHO05D006349 2.7e-19 98.6 83 55.4
Gohir.A13G202800 Gossypium hirsutum HOM05D006374 ORTHO05D006349 3.5e-19 98.2 80 55.0
PSO339G4060 Papaver somniferum HOM05D006374 ORTHO05D006349 3.5e-19 98.2 77 54.5
Potri.010G180300 Populus trichocarpa HOM05D006374 ORTHO05D006349 4.6e-19 97.8 86 52.3
Aa31LG4G17070 Aethionema arabicum HOM05D006374 ORTHO05D006349 6.0e-19 97.4 84 52.4
DCAR_026222 Daucus carota HOM05D001045 ORTHO05D001542 7.9e-19 97.1 101 47.5
AL5G27890 Arabidopsis lyrata HOM05D006374 ORTHO05D006349 1.0e-18 96.7 84 53.6
COL.COLO4_29525 Corchorus olitorius HOM05D006374 ORTHO05D006349 1.0e-18 96.7 109 45.0
Migut.B01731 Erythranthe guttata HOM05D006374 ORTHO05D006349 1.0e-18 96.7 90 47.8
AUR62040664 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.3e-18 96.3 81 53.1
AUR62044358 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.3e-18 96.3 81 53.1
Thecc.03G123000 Theobroma cacao HOM05D006374 ORTHO05D006349 1.3e-18 96.3 83 56.6
Thhalv10010584m.g Eutrema salsugineum HOM05D006374 ORTHO05D006349 1.8e-18 95.9 83 53.0
Lsat_1_v5_gn_4_76860 Lactuca sativa HOM05D006374 ORTHO05D006349 1.8e-18 95.9 71 57.7
Potri.015G090800 Populus trichocarpa HOM05D006374 ORTHO05D006349 1.8e-18 95.9 86 52.3
Hund05647 Selenicereus undatus HOM05D006374 ORTHO05D006349 1.8e-18 95.9 82 51.2
FAN11G0071 Fragaria x ananassa HOM05D006374 ORTHO05D006349 3.0e-18 95.1 84 52.4
Manes.14G055266 Manihot esculenta HOM05D006374 ORTHO05D006349 3.0e-18 95.1 83 53.0
Carub.0005s1466 Capsella rubella HOM05D006374 ORTHO05D006349 6.7e-18 94.0 84 51.2
AUR62041753 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.5e-17 92.8 81 54.3
DCAR_007483 Daucus carota HOM05D006374 ORTHO05D006349 1.9e-17 92.4 67 64.2
Sp5g13550 Schrenkiella parvula HOM05D006374 ORTHO05D006349 1.9e-17 92.4 84 48.8
QL10p005050 Quercus lobata HOM05D006374 ORTHO05D006349 2.5e-17 92.0 81 54.3
AT3G48480 Arabidopsis thaliana HOM05D006374 ORTHO05D006349 3.3e-17 91.7 84 48.8
TWI18G0954 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 3.3e-17 91.7 85 44.7
TWI63G0087 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 3.3e-17 91.7 85 44.7
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 5.7e-17 90.9 82 47.6
EL10Ac4g07621 Beta vulgaris HOM05D006374 ORTHO05D006349 1.3e-16 89.7 81 53.1
CARHR157240 Cardamine hirsuta HOM05D006374 ORTHO05D006349 2.2e-16 89.0 84 50.0
TWI39G0161 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 2.2e-16 89.0 85 48.2
Hund23135 Selenicereus undatus HOM05D006374 ORTHO05D006349 2.8e-16 88.6 81 48.1
AUR62041397 Chenopodium quinoa HOM05D006374 ORTHO05D006349 6.3e-16 87.4 81 50.6
SGA_v2.0_scaffold277G46663 Striga asiatica HOM05D006374 ORTHO05D006349 6.3e-16 87.4 83 48.2
Sc16g0003540 Simmondsia chinensis HOM05D006374 ORTHO05D006349 8.2e-16 87.0 83 51.8
THA.LOC104798954 Tarenaya hassleriana HOM05D006374 ORTHO05D006349 2.4e-15 85.5 84 50.0
COL.COLO4_28091 Corchorus olitorius HOM05D001045 ORTHO05D001542 3.1e-15 85.1 71 54.9
A06p27690 Brassica napus HOM05D006374 ORTHO05D006349 2.0e-14 82.4 83 48.2
DCAR_005456 Daucus carota HOM05D014044 ORTHO05D006349 2.0e-14 82.4 91 42.9
DCAR_017413 Daucus carota HOM05D014044 ORTHO05D006349 2.6e-14 82.0 91 42.9
SEGI_20117 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 2.6e-14 82.0 75 46.7
DCAR_029290 Daucus carota HOM05D014044 ORTHO05D006349 3.4e-14 81.6 91 42.9
SEGI_23287 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 4.5e-14 81.3 75 46.7
BraA06t25705Z Brassica rapa HOM05D006374 ORTHO05D006349 5.9e-14 80.9 83 47.0
AUR62026946 Chenopodium quinoa HOM05D006374 ORTHO05D006349 5.9e-14 80.9 76 51.3
DCAR_030060 Daucus carota HOM05D014044 ORTHO05D015632 7.7e-14 80.5 85 45.9
Aqoxy5G04000 Aquilegia oxysepala HOM05D001292 ORTHO05D006349 1.3e-13 79.7 76 46.1
BcaB02g10649 Brassica carinata HOM05D006374 ORTHO05D006349 1.3e-13 79.7 83 45.8
Gorai.001G059300 Gossypium raimondii HOM05D006374 ORTHO05D006349 1.3e-13 79.7 65 52.3
PSO384G4638 Papaver somniferum HOM05D006374 ORTHO05D006349 1.3e-13 79.7 63 54.0
BcaC01g02345 Brassica carinata HOM05D006374 ORTHO05D006349 2.2e-13 79.0 83 45.8
BolC3t18904H Brassica oleracea HOM05D006374 ORTHO05D006349 2.2e-13 79.0 83 45.8
ClCG03G003510 Citrullus lanatus HOM05D006374 ORTHO05D006349 2.2e-13 79.0 80 46.2
MELO3C002334.2 Cucumis melo HOM05D006374 ORTHO05D006349 6.5e-13 77.4 79 46.8
CsaV3_1G009310 Cucumis sativus L. HOM05D006374 ORTHO05D006349 6.5e-13 77.4 79 46.8
DCAR_030104 Daucus carota HOM05D014044 ORTHO05D006349 2.5e-12 75.5 91 40.7
DCAR_015986 Daucus carota HOM05D008184 ORTHO05D010791 7.2e-12 73.9 89 40.4
DCAR_018007 Daucus carota HOM05D001292 ORTHO05D006349 7.2e-12 73.9 89 40.4
DCAR_005060 Daucus carota HOM05D017553 ORTHO05D010791 9.4e-12 73.6 72 45.8
DCAR_001019 Daucus carota HOM05D020440 ORTHO05D006349 2.1e-11 72.4 66 43.9
DCAR_005483 Daucus carota HOM05D020440 ORTHO05D006349 2.1e-11 72.4 66 43.9
DCAR_028606 Daucus carota HOM05D020440 ORTHO05D006349 2.1e-11 72.4 66 43.9
FAN25G0911 Fragaria x ananassa HOM05D006374 ORTHO05D006349 4.6e-11 71.2 63 52.4
Zm00001eb168510 Zea mays HOM05D006374 ORTHO05D006349 7.4e-09 63.9 92 37.0
DCAR_024113 Daucus carota HOM05D006374 ORTHO05D006349 4.8e-08 61.2 52 46.2
Pp3c15_7620 Physcomitrium patens HOM05D001292 ORTHO05D001202 4.8e-08 61.2 67 38.8
C03p66330 Brassica napus HOM05D006374 ORTHO05D006349 2.4e-07 58.9 65 46.2
DCAR_022708 Daucus carota HOM05D010862 ORTHO05D010791 9.1e-07 57.0 64 37.5
Pp3c9_9780 Physcomitrium patens HOM05D001292 ORTHO05D001202 2.6e-06 55.5 69 36.2
Pp3c9_9860 Physcomitrium patens HOM05D001292 ORTHO05D001202 2.6e-06 55.5 69 36.2


User provided reference genes

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