Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06800 Coffea canephora HOM05D006374 ORTHO05D006349 7.3e-52 206.8 97 100.0
Cc01_g06860 Coffea canephora HOM05D006374 ORTHO05D006349 4.6e-38 161.0 78 92.3
Thecc.03G123000 Theobroma cacao HOM05D006374 ORTHO05D006349 1.3e-24 116.3 77 63.6
Potri.015G090800 Populus trichocarpa HOM05D006374 ORTHO05D006349 1.9e-23 112.5 78 60.3
Cc03_g12860 Coffea canephora HOM05D006374 ORTHO05D006349 2.4e-23 112.1 77 58.4
QL10p005050 Quercus lobata HOM05D006374 ORTHO05D006349 2.4e-23 112.1 78 59.0
PSO339G5603 Papaver somniferum HOM05D006374 ORTHO05D006349 4.2e-23 111.3 77 58.4
Prupe.5G156800 Prunus persica HOM05D006374 ORTHO05D006349 7.1e-23 110.5 78 56.4
Haze_07271 Corylus avellana HOM05D006374 ORTHO05D006349 2.7e-22 108.6 77 57.1
CiPaw.11G012000 Carya illinoinensis HOM05D006374 ORTHO05D006349 4.6e-22 107.8 78 55.1
Dinv11161 Davidia involucrata HOM05D006374 ORTHO05D006349 4.6e-22 107.8 78 56.4
Rhsim08G0189000 Rhododendron simsii HOM05D006374 ORTHO05D006349 4.6e-22 107.8 78 53.8
TWI39G0161 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 4.6e-22 107.8 78 56.4
FAN08G0738 Fragaria x ananassa HOM05D006374 ORTHO05D006349 6.0e-22 107.5 77 55.8
Sabra15G0112900 Salix brachista HOM05D006374 ORTHO05D006349 6.0e-22 107.5 78 56.4
Cfa018891 Carpinus fangiana HOM05D006374 ORTHO05D006349 7.9e-22 107.1 77 55.8
FAN13G0453 Fragaria x ananassa HOM05D006374 ORTHO05D006349 7.9e-22 107.1 77 55.8
MD14G1163400 Malus domestica HOM05D006374 ORTHO05D006349 7.9e-22 107.1 86 55.8
PSO339G4060 Papaver somniferum HOM05D006374 ORTHO05D006349 1.0e-21 106.7 77 57.1
RcHm_v2.0_Chr7g0191071 Rosa chinensis HOM05D006374 ORTHO05D006349 1.0e-21 106.7 78 55.1
FvH4_5g07530 Fragaria vesca HOM05D006374 ORTHO05D006349 1.3e-21 106.3 77 54.5
FAN18G3707 Fragaria x ananassa HOM05D006374 ORTHO05D006349 1.3e-21 106.3 77 54.5
PSO384G4638 Papaver somniferum HOM05D006374 ORTHO05D006349 1.3e-21 106.3 77 55.8
Sopen11g029890 Solanum pennellii HOM05D006374 ORTHO05D006349 1.3e-21 106.3 78 55.1
Gohir.A13G202800 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.8e-21 105.9 77 54.5
Gohir.D13G208100 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.8e-21 105.9 77 54.5
Gorai.013G237200 Gossypium raimondii HOM05D006374 ORTHO05D006349 1.8e-21 105.9 77 54.5
Oeu025935.3 Olea europaea HOM05D001292 ORTHO05D006349 1.8e-21 105.9 77 55.8
Solyc11g072220.2 Solanum lycopersicum HOM05D006374 ORTHO05D006349 1.8e-21 105.9 78 55.1
Aqoxy5G04000 Aquilegia oxysepala HOM05D001292 ORTHO05D006349 3.0e-21 105.1 81 51.9
CSS0045232 Camellia sinensis var. sinensis HOM05D006374 ORTHO05D006349 3.0e-21 105.1 77 55.8
CANSAT80G0307 Cannabis sativa HOM05D006374 ORTHO05D006349 3.0e-21 105.1 77 53.2
PGSC0003DMG400027413 Solanum tuberosum HOM05D006374 ORTHO05D006349 3.0e-21 105.1 78 53.8
Potri.010G180300 Populus trichocarpa HOM05D006374 ORTHO05D006349 3.9e-21 104.8 93 52.7
GSVIVG01007539001 Vitis vinifera HOM05D006374 ORTHO05D006349 3.9e-21 104.8 78 52.6
FAN25G0911 Fragaria x ananassa HOM05D006374 ORTHO05D006349 5.1e-21 104.4 77 54.5
Sabra10G0138300 Salix brachista HOM05D006374 ORTHO05D006349 6.7e-21 104.0 93 52.7
TAR374G0798 Trochodendron aralioides HOM05D006374 ORTHO05D006349 6.7e-21 104.0 78 53.8
Actinidia33103 Actinidia chinensis HOM05D006374 ORTHO05D006349 1.1e-20 103.2 78 52.6
Peaxi162Scf00234g00413 Petunia axillaris HOM05D006374 ORTHO05D006349 1.1e-20 103.2 86 53.5
Eucgr.B00120 Eucalyptus grandis HOM05D006374 ORTHO05D006349 1.9e-20 102.4 78 56.4
FvH4_3g25530 Fragaria vesca HOM05D006374 ORTHO05D006349 1.9e-20 102.4 77 53.2
FAN11G0071 Fragaria x ananassa HOM05D006374 ORTHO05D006349 1.9e-20 102.4 77 53.2
Oeu032041.1 Olea europaea HOM05D001292 ORTHO05D006349 1.9e-20 102.4 77 53.2
CAN.G328.5 Capsicum annuum HOM05D006374 ORTHO05D006349 2.5e-20 102.1 77 55.8
ClCG03G003510 Citrullus lanatus HOM05D006374 ORTHO05D006349 3.3e-20 101.7 77 54.5
COL.COLO4_28091 Corchorus olitorius HOM05D001045 ORTHO05D001542 3.3e-20 101.7 73 60.3
MSTRG.20819 Avicennia marina HOM05D006374 ORTHO05D006349 5.6e-20 100.9 73 56.2
Medtr3g075090 Medicago truncatula HOM05D006374 ORTHO05D006349 5.6e-20 100.9 72 55.6
Lj1g0028093 Lotus japonicus HOM05D006374 ORTHO05D006349 7.4e-20 100.5 72 59.7
PGSC0003DMG401023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 7.4e-20 100.5 77 54.5
Sopen02g012480 Solanum pennellii HOM05D006374 ORTHO05D006349 9.6e-20 100.1 77 54.5
TWI63G0087 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 9.6e-20 100.1 78 52.6
MELO3C002334.2 Cucumis melo HOM05D006374 ORTHO05D006349 1.3e-19 99.8 78 52.6
CsaV3_1G009310 Cucumis sativus L. HOM05D006374 ORTHO05D006349 1.3e-19 99.8 78 52.6
Duzib205G1366 Durio zibethinus HOM05D006374 ORTHO05D006349 2.1e-19 99.0 74 60.8
Psat5g141920 Pisum sativum HOM05D006374 ORTHO05D006349 2.1e-19 99.0 72 56.9
COL.COLO4_29525 Corchorus olitorius HOM05D006374 ORTHO05D006349 2.8e-19 98.6 73 58.9
Migut.B01731 Erythranthe guttata HOM05D006374 ORTHO05D006349 3.7e-19 98.2 73 56.2
Migut.D00697 Erythranthe guttata HOM05D006374 ORTHO05D006349 3.7e-19 98.2 78 53.8
Sed0019471 Sechium edule HOM05D006374 ORTHO05D006349 3.7e-19 98.2 78 51.3
Atru.chr9.1014 Acer truncatum HOM05D006374 ORTHO05D006349 4.8e-19 97.8 78 50.0
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 8.2e-19 97.1 78 51.3
SEGI_20117 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 8.2e-19 97.1 82 47.6
SEGI_32304 Sequoiadendron giganteum HOM05D006374 ORTHO05D006349 8.2e-19 97.1 77 50.6
MSTRG.18477 Avicennia marina HOM05D006374 ORTHO05D006349 1.1e-18 96.7 78 55.1
SEGI_23287 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 1.1e-18 96.7 77 50.6
EL10Ac3g05470 Beta vulgaris HOM05D006374 ORTHO05D006349 1.4e-18 96.3 77 51.9
Ciclev10021330m.g Citrus clementina HOM05D006374 ORTHO05D006349 1.8e-18 95.9 81 50.6
Manes.14G055266 Manihot esculenta HOM05D006374 ORTHO05D006349 1.8e-18 95.9 78 52.6
arahy.Tifrunner.gnm1.ann1.6C93RA Arachis hypogaea HOM05D006374 ORTHO05D006349 3.1e-18 95.1 72 56.9
Migut.D00695 Erythranthe guttata HOM05D006374 ORTHO05D006349 4.0e-18 94.7 70 57.1
AUR62041397 Chenopodium quinoa HOM05D006374 ORTHO05D006349 9.0e-18 93.6 77 49.4
Nitab4.5_0000205g0050 Nicotiana tabacum HOM05D006374 ORTHO05D006349 9.0e-18 93.6 94 46.8
ATR0824G075 Amborella trichopoda HOM05D001292 ORTHO05D006349 1.2e-17 93.2 77 46.8
Gorai.001G059300 Gossypium raimondii HOM05D006374 ORTHO05D006349 1.5e-17 92.8 72 54.2
Phvul.009G168700 Phaseolus vulgaris HOM05D006374 ORTHO05D006349 1.5e-17 92.8 72 54.2
Thhalv10010584m.g Eutrema salsugineum HOM05D006374 ORTHO05D006349 2.0e-17 92.4 79 50.6
SGA_v2.0_scaffold277G46663 Striga asiatica HOM05D006374 ORTHO05D006349 2.0e-17 92.4 70 54.3
THA.LOC104798954 Tarenaya hassleriana HOM05D006374 ORTHO05D006349 2.0e-17 92.4 78 48.7
ECA232G1265 Erigeron canadensis HOM05D006374 ORTHO05D006349 5.8e-17 90.9 77 49.4
Lsat_1_v5_gn_9_14500 Lactuca sativa HOM05D006374 ORTHO05D006349 7.6e-17 90.5 90 45.6
Nitab4.5_0003471g0010 Nicotiana tabacum HOM05D006374 ORTHO05D006349 7.6e-17 90.5 108 41.7
Os11g0214001 Oryza sativa ssp. japonica HOM05D006374 ORTHO05D006349 7.6e-17 90.5 69 49.3
Ca_16088_v3 Cicer arietinum L. HOM05D006374 ORTHO05D006349 1.0e-16 90.1 72 52.8
Hund05647 Selenicereus undatus HOM05D006374 ORTHO05D006349 1.0e-16 90.1 77 48.1
arahy.Tifrunner.gnm1.ann1.EEZ80W Arachis hypogaea HOM05D006374 ORTHO05D006349 1.3e-16 89.7 72 55.6
Carub.0005s1466 Capsella rubella HOM05D006374 ORTHO05D006349 1.7e-16 89.4 75 53.3
Lsat_1_v5_gn_4_76860 Lactuca sativa HOM05D006374 ORTHO05D006349 2.9e-16 88.6 78 47.4
Glyma.04G193100 Glycine max HOM05D006374 ORTHO05D006349 3.8e-16 88.2 72 52.8
PGR083G0950 Punica granatum HOM05D006374 ORTHO05D006349 3.8e-16 88.2 68 52.9
Sc16g0003540 Simmondsia chinensis HOM05D006374 ORTHO05D006349 3.8e-16 88.2 73 46.6
AT3G48480 Arabidopsis thaliana HOM05D006374 ORTHO05D006349 1.9e-15 85.9 75 49.3
Nn4g22459 Nelumbo nucifera HOM05D006374 ORTHO05D006349 1.9e-15 85.9 77 48.1
VMungo1309G0655 Vigna mungo HOM05D006374 ORTHO05D006349 5.5e-15 84.3 72 50.0
Zm00001eb168510 Zea mays HOM05D006374 ORTHO05D006349 7.1e-15 84.0 69 46.4
CARHR157240 Cardamine hirsuta HOM05D006374 ORTHO05D006349 9.3e-15 83.6 73 50.7
EL10Ac4g07621 Beta vulgaris HOM05D006374 ORTHO05D006349 1.2e-14 83.2 73 49.3
Aa31LG4G17070 Aethionema arabicum HOM05D006374 ORTHO05D006349 2.7e-14 82.0 75 45.3
AUR62026946 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.7e-14 82.0 66 50.0
SGA_v2.0_scaffold29G12157 Striga asiatica HOM05D006374 ORTHO05D006349 2.7e-14 82.0 72 45.8
BraA06t25705Z Brassica rapa HOM05D006374 ORTHO05D006349 1.0e-13 80.1 76 47.4
BcaB02g10649 Brassica carinata HOM05D006374 ORTHO05D006349 1.3e-13 79.7 76 46.1
A06p27690 Brassica napus HOM05D006374 ORTHO05D006349 1.3e-13 79.7 76 46.1
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 2.3e-13 79.0 60 53.3
BcaC01g02345 Brassica carinata HOM05D006374 ORTHO05D006349 3.9e-13 78.2 76 44.7
C03p66330 Brassica napus HOM05D006374 ORTHO05D006349 3.9e-13 78.2 76 44.7
BolC3t18904H Brassica oleracea HOM05D006374 ORTHO05D006349 3.9e-13 78.2 76 44.7
Sp5g13550 Schrenkiella parvula HOM05D006374 ORTHO05D006349 5.1e-13 77.8 76 46.1
Hund23135 Selenicereus undatus HOM05D006374 ORTHO05D006349 6.7e-13 77.4 75 50.7
Nitab4.5_0004577g0040 Nicotiana tabacum HOM05D006374 ORTHO05D006349 8.7e-13 77.0 77 45.5
AUR62017054 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.9e-12 75.9 73 45.2
Nitab4.5_0000467g0140 Nicotiana tabacum HOM05D006374 ORTHO05D006349 1.9e-12 75.9 77 44.2
AUR62040664 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.2e-11 72.4 73 43.8
AUR62044358 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.2e-11 72.4 73 43.8
Actinidia25584 Actinidia chinensis HOM05D006374 ORTHO05D006349 2.8e-11 72.0 70 45.7
DCAR_007483 Daucus carota HOM05D006374 ORTHO05D006349 2.8e-11 72.0 56 53.6
MBI11_g19364_MAGBIO Magnolia biondii HOM05D006374 ORTHO05D006349 1.1e-10 70.1 63 47.6
DCAR_024275 Daucus carota HOM05D017553 ORTHO05D006349 3.1e-10 68.6 79 36.7
DCAR_029290 Daucus carota HOM05D014044 ORTHO05D006349 3.1e-10 68.6 79 35.4
PSO384G0777 Papaver somniferum HOM05D006374 ORTHO05D006349 3.1e-10 68.6 53 54.7
Gohir.A07G051500 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.2e-09 66.6 45 62.2
Gohir.D07G055900 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.2e-09 66.6 45 62.2
DCAR_017413 Daucus carota HOM05D014044 ORTHO05D006349 2.0e-09 65.9 79 34.2
DCAR_010912 Daucus carota HOM05D006374 ORTHO05D006349 4.5e-09 64.7 80 31.2
DCAR_005456 Daucus carota HOM05D014044 ORTHO05D006349 1.4e-07 59.7 63 38.1
AL5G27890 Arabidopsis lyrata HOM05D006374 ORTHO05D006349 1.9e-07 59.3 44 56.8
DCAR_015986 Daucus carota HOM05D008184 ORTHO05D010791 1.2e-06 56.6 84 32.1
DCAR_018007 Daucus carota HOM05D001292 ORTHO05D006349 1.2e-06 56.6 84 32.1
DCAR_005126 Daucus carota HOM05D008184 ORTHO05D015632 7.9e-06 53.9 67 41.8


User provided reference genes

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