Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 7.6e-222 773.5 379 100.0
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 6.8e-170 600.9 382 77.2
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.3e-164 581.6 382 75.9
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.3e-164 581.6 382 75.9
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.3e-164 581.6 380 75.8
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.8e-163 578.9 383 75.5
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 4.7e-163 578.2 389 76.6
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.8e-162 576.2 379 73.6
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 5.2e-162 574.7 393 72.8
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 5.2e-162 574.7 381 75.3
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.9e-160 568.9 391 74.7
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.3e-160 567.4 391 74.4
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.1e-159 567.0 365 77.0
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 1.9e-159 566.2 382 73.8
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 4.1e-159 565.1 382 73.8
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 9.2e-159 563.9 379 73.6
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 3.5e-158 562.0 379 73.4
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 3.5e-158 562.0 384 73.2
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.0e-157 560.5 384 71.4
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 3.9e-157 558.5 323 81.7
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 5.0e-157 558.1 368 74.2
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 6.6e-157 557.8 378 73.5
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 8.6e-157 557.4 329 79.9
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.1e-156 557.0 344 78.2
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 4.3e-156 555.1 383 72.6
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 4.3e-156 555.1 387 70.8
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 7.3e-156 554.3 389 71.7
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 7.3e-156 554.3 391 69.1
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 1.2e-155 553.5 382 72.3
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 3.6e-155 552.0 383 71.8
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 3.6e-155 552.0 379 72.6
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 4.7e-155 551.6 382 72.5
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 6.2e-155 551.2 369 72.4
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 4.0e-154 548.5 360 74.4
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 6.8e-154 547.7 373 72.7
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 8.9e-154 547.4 380 71.1
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 1.5e-153 546.6 385 71.7
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.5e-153 546.6 370 73.0
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 2.6e-153 545.8 386 71.5
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 3.4e-153 545.4 329 79.6
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 4.4e-153 545.0 323 79.3
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.4e-153 545.0 394 70.6
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 4.4e-153 545.0 325 80.9
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 7.5e-153 544.3 371 72.8
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 9.9e-153 543.9 343 75.8
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 9.9e-153 543.9 370 72.4
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.3e-152 543.5 371 71.7
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 2.9e-152 542.3 386 71.2
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 3.7e-152 542.0 388 69.8
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 3.7e-152 542.0 357 74.2
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 4.9e-152 541.6 389 71.7
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 6.4e-152 541.2 385 70.4
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 6.4e-152 541.2 385 70.4
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.4e-151 539.3 390 69.5
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-151 538.9 390 69.5
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 4.1e-151 538.5 388 69.6
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.1e-151 538.5 388 69.6
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 4.1e-151 538.5 371 71.7
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-150 536.6 390 69.2
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 2.1e-150 536.2 381 70.1
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 6.0e-150 534.6 389 69.4
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 3.0e-149 532.3 299 84.9
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 4.3e-148 528.5 381 68.8
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 5.6e-148 528.1 381 69.6
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 9.5e-148 527.3 461 61.2
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 1.6e-147 526.6 381 68.2
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.6e-147 526.6 381 68.2
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 1.4e-146 523.5 382 67.5
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.8e-146 523.1 357 71.1
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 3.1e-146 522.3 388 66.8
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 3.1e-146 522.3 383 67.1
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 7.6e-145 517.7 383 65.5
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.8e-144 515.4 384 65.6
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 3.2e-143 512.3 379 68.6
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 9.2e-143 510.8 304 78.3
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 9.2e-143 510.8 422 63.0
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.0e-141 507.3 380 65.8
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.3e-141 506.9 380 68.4
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.3e-141 506.9 482 58.7
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 5.1e-141 505.0 354 69.8
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.5e-140 503.4 283 83.4
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.4e-138 496.1 305 75.1
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 3.1e-138 495.7 379 65.7
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 2.0e-137 493.0 379 65.2
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 8.4e-136 487.6 386 63.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 7.1e-135 484.6 297 78.1
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.6e-134 483.4 345 67.8
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 2.7e-134 482.6 419 58.9
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 4.3e-132 475.3 325 70.2
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 2.1e-131 473.0 392 61.5
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.8e-131 471.9 331 70.7
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 3.1e-130 469.2 296 73.3
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 2.0e-129 466.5 304 71.1
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 9.3e-127 457.6 365 63.3
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 2.1e-126 456.4 358 65.4
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.0e-125 452.6 331 68.0
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 6.9e-114 414.8 382 58.6
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.8e-109 400.2 343 63.3
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 9.3e-103 377.9 227 77.5
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.6e-102 377.1 296 60.1
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 4.6e-102 375.6 293 60.1
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.8e-101 373.6 343 53.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 6.5e-96 355.1 213 77.0
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 6.5e-96 355.1 213 77.0
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 6.5e-96 355.1 213 77.0
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.1e-95 354.4 231 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.6e-94 350.5 293 54.9
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 2.0e-92 343.6 213 75.1
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.4e-90 337.4 249 68.3
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 4.7e-86 322.4 290 51.0
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.4e-82 310.8 292 58.2
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 3.3e-76 289.7 287 47.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 6.3e-75 285.4 230 60.9
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 7.0e-74 282.0 309 46.3
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 9.4e-71 271.6 177 71.8
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 3.1e-66 256.5 278 45.3
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.2e-65 254.6 157 79.0
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.6e-60 236.9 135 83.0
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.3e-40 170.6 158 54.4
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.9e-39 167.5 161 48.4
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 1.8e-37 161.0 164 54.3
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.4e-34 150.6 108 67.6
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.9e-32 143.3 119 58.8
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 2.5e-31 140.6 97 63.9
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 5.4e-26 122.9 100 59.0
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 2.8e-22 110.5 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 5.1e-16 89.7 47 83.0
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 5.1e-16 89.7 47 83.0
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 1.3e-08 65.1 41 78.0
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 3.0e-08 63.9 109 38.5


User provided reference genes

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