Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 3528.4 1848 100.0
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2551.9 1818 72.9
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2538.8 1841 70.2
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2476.4 1848 68.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2463.3 1841 68.9
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2463.0 1840 68.1
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2451.0 1854 68.1
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2443.3 1819 69.3
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2425.6 1820 68.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2409.4 1833 69.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2408.6 1819 67.7
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2404.8 1818 67.7
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2399.0 1844 67.4
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2394.0 1815 67.5
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2387.5 1844 67.1
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2385.9 1824 67.8
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2384.8 1817 68.0
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2380.9 1844 67.2
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2375.5 1870 66.4
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2372.8 1874 66.2
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2367.4 1816 67.5
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2367.4 1846 66.6
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2364.7 1927 65.4
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2364.3 1848 67.9
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2360.5 1844 66.8
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2345.1 1819 66.2
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2337.8 1819 66.0
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2335.8 1820 66.4
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2316.6 1817 65.9
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2313.1 1843 65.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2310.8 1815 66.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2303.1 1817 66.0
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2300.8 1820 65.7
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2299.2 1820 66.4
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2298.9 1846 64.8
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2298.5 1824 65.6
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2295.4 1817 65.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2295.0 1813 65.3
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2288.8 1840 65.6
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2286.9 1867 64.3
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2284.6 1834 64.8
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2284.6 1839 65.1
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2281.5 1843 65.3
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2279.2 1867 64.1
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2261.5 1847 63.8
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2261.1 1842 64.1
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2260.7 1844 64.4
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2258.0 1844 64.3
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2256.5 1842 63.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2247.2 1850 63.5
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2246.9 1840 63.8
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2246.5 1813 65.0
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2243.4 1851 64.1
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2241.1 1835 63.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2237.6 1849 63.8
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2236.5 1847 63.7
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2235.7 1819 63.3
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2233.8 2394 53.3
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2229.1 1844 63.4
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2227.6 1840 64.3
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2213.3 1817 63.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2213.0 1816 62.9
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2207.9 1840 62.4
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2206.4 1842 62.3
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2205.3 1839 62.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2204.1 1984 59.4
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2197.5 1816 63.1
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2196.0 1831 63.0
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2195.6 1856 62.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2192.5 1846 62.1
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2191.0 1823 63.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2168.3 1796 63.9
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2137.5 1842 61.5
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2131.7 1833 61.5
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2059.6 1814 60.4
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1993.8 1840 57.3
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1983.0 1339 74.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1971.1 1500 67.1
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1964.1 1319 75.1
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1961.8 1479 68.8
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1880.5 1395 70.0
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1875.1 1395 70.2
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1720.3 1303 69.5
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1668.7 1853 50.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1663.7 1340 67.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1642.5 1347 65.1
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1605.1 1258 67.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1567.7 1875 45.9
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1531.5 1839 46.3
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1528.5 1095 71.5
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1500.7 1887 44.8
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1459.1 1150 65.5
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1399.8 1646 46.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1299.6 1355 54.5
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1269.2 1143 57.7
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1148.7 1055 58.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1111.3 905 62.1
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.7e-282 977.2 1576 36.9
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.9e-278 963.8 886 56.4
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 7.0e-252 875.5 1749 33.8
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 4.1e-236 823.2 1744 33.4
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.0e-230 804.3 635 66.1
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.2e-216 756.1 810 51.5
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.2e-205 721.1 600 63.2
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 7.8e-195 686.0 509 69.7
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 7.4e-169 599.7 2017 27.0
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 4.8e-168 597.0 707 48.4
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.8e-159 568.5 480 60.6
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 9.4e-156 556.2 457 62.4
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 2.3e-154 551.6 449 64.6
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.5e-153 548.1 347 81.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.8e-144 517.3 515 53.6
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.3e-133 482.6 302 77.2
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 8.5e-133 479.9 483 56.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 2.5e-116 425.2 1654 25.4
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.7e-109 402.5 835 34.3
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-103 382.9 374 56.1
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 6.8e-98 364.0 316 61.7
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 9.8e-97 360.1 315 61.6
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 4.1e-95 354.8 317 60.3
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.3e-77 296.6 161 88.2
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.4e-71 274.6 273 54.9
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 9.3e-63 247.3 348 42.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 6.0e-62 244.6 339 44.5
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 5.3e-58 231.5 222 58.6
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.8e-51 208.4 206 52.4
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.9e-44 186.4 141 67.4
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 9.7e-44 184.1 176 54.5
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-43 183.3 117 76.9
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 9.0e-42 177.6 157 59.2
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.0e-41 176.4 367 36.2
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 5.9e-41 174.9 230 44.8
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 2.2e-40 172.9 179 55.9
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 5.0e-40 171.8 179 55.9
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 3.0e-37 162.5 132 63.6
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 7.4e-36 157.9 167 55.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.2e-35 156.4 317 35.6
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 4.8e-35 155.2 179 45.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 9.4e-31 141.0 218 36.7
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-30 140.6 258 35.7
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.7e-30 138.7 175 42.3
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 3.3e-28 132.5 151 51.7
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 8.2e-27 127.9 88 70.5
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.0e-25 123.2 154 48.7
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 5.9e-25 121.7 73 79.5
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 1.1e-23 117.5 78 75.6
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.8e-21 110.2 151 41.7
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.6e-20 106.3 92 58.7
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 7.4e-20 104.8 196 30.1
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.9e-17 95.1 81 58.0
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.9e-17 95.1 87 50.6
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.1e-15 90.9 156 36.5
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.9e-15 90.1 74 55.4
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.1e-14 85.1 69 66.7
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 1.8e-13 83.6 79 54.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 8.3e-11 74.7 55 65.5
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 5.0e-08 65.5 60 48.3
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.9e-07 63.5 117 34.2
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.2e-07 62.4 138 32.6
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.2e-06 60.8 46 71.7


User provided reference genes

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