Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06470 Coffea canephora HOM05D007395 ORTHO05D009347 1.4e-93 346.7 224 100.0
Actinidia37733 Actinidia chinensis HOM05D007395 ORTHO05D009347 2.1e-17 93.6 213 32.9
Cpa.g.sc70.86 Carica papaya HOM05D007395 ORTHO05D009347 3.6e-17 92.8 85 61.2
ClCG01G008240 Citrullus lanatus HOM05D007395 ORTHO05D009347 5.7e-15 85.5 85 58.8
MELO3C008464.2 Cucumis melo HOM05D007395 ORTHO05D009347 7.4e-15 85.1 85 62.4
TAR371G0182 Trochodendron aralioides HOM05D007395 ORTHO05D009347 9.7e-15 84.7 84 54.8
Lsat_1_v5_gn_2_94600 Lactuca sativa HOM05D007395 ORTHO05D009347 1.3e-14 84.3 84 65.5
MD09G1004900 Malus domestica HOM05D007395 ORTHO05D009347 1.6e-14 84.0 213 38.5
BcaB03g13164 Brassica carinata HOM05D007395 ORTHO05D009347 2.2e-14 83.6 79 70.9
BolC8t49196H Brassica oleracea HOM05D007395 ORTHO05D009347 2.8e-14 83.2 93 65.6
C08p47090 Brassica napus HOM05D007395 ORTHO05D009347 4.8e-14 82.4 89 61.8
MELO3C025062.2 Cucumis melo HOM05D007395 ORTHO05D009347 4.8e-14 82.4 87 54.0
TWI09G1106 Tripterygium wilfordii HOM05D007395 ORTHO05D009347 4.8e-14 82.4 83 61.4
QL02p070020 Quercus lobata HOM05D007395 ORTHO05D009347 8.2e-14 81.6 92 52.2
BcaB08g34248 Brassica carinata HOM05D007395 ORTHO05D009347 1.1e-13 81.3 216 36.6
CsaV3_5G020150 Cucumis sativus L. HOM05D007395 ORTHO05D009347 1.1e-13 81.3 85 55.3
FAN09G3300 Fragaria x ananassa HOM05D007395 ORTHO05D009347 1.1e-13 81.3 168 41.7
FAN14G5742 Fragaria x ananassa HOM05D007395 ORTHO05D009347 1.1e-13 81.3 168 41.7
MD17G1008900 Malus domestica HOM05D007395 ORTHO05D009347 1.1e-13 81.3 207 45.4
Thecc.04G044800 Theobroma cacao HOM05D007395 ORTHO05D009347 1.8e-13 80.5 82 57.3
FvH4_6g54150 Fragaria vesca HOM05D007395 ORTHO05D009347 3.1e-13 79.7 199 38.2
THA.LOC104825649 Tarenaya hassleriana HOM05D007395 ORTHO05D009347 5.3e-13 79.0 78 66.7
TWI73G1187 Tripterygium wilfordii HOM05D007395 ORTHO05D009347 5.3e-13 79.0 86 55.8
Oeu013474.1 Olea europaea HOM05D007395 ORTHO05D009347 6.9e-13 78.6 79 57.0
Oeu013475.1 Olea europaea HOM05D007395 ORTHO05D009347 6.9e-13 78.6 79 57.0
Oeu013476.1 Olea europaea HOM05D007395 ORTHO05D009347 6.9e-13 78.6 79 57.0
Cfa007180 Carpinus fangiana HOM05D007395 ORTHO05D009347 1.2e-12 77.8 85 52.9
Thhalv10008746m.g Eutrema salsugineum HOM05D007395 ORTHO05D009347 1.5e-12 77.4 220 49.1
Lj1g0024459 Lotus japonicus HOM05D007395 ORTHO05D009347 2.0e-12 77.0 93 49.5
Carub.0001s1257 Capsella rubella HOM05D007395 ORTHO05D009347 2.6e-12 76.6 227 44.9
CiPaw.03G003300 Carya illinoinensis HOM05D007395 ORTHO05D009347 4.5e-12 75.9 214 36.9
Sed0007630 Sechium edule HOM05D007395 ORTHO05D009347 5.9e-12 75.5 85 54.1
Psat3g094200 Pisum sativum HOM05D007395 ORTHO05D009347 7.7e-12 75.1 83 54.2
BcaC07g41677 Brassica carinata HOM05D007395 ORTHO05D009347 1.3e-11 74.3 220 40.0
BolC8t52248H Brassica oleracea HOM05D007395 ORTHO05D009347 1.3e-11 74.3 220 40.0
C08p15690 Brassica napus HOM05D007395 ORTHO05D009347 1.7e-11 73.9 92 57.6
Prupe.3G311900 Prunus persica HOM05D007395 ORTHO05D009347 1.7e-11 73.9 208 37.0
Medtr7g083640 Medicago truncatula HOM05D007395 ORTHO05D009347 2.2e-11 73.6 81 54.3
TAR622G0576 Trochodendron aralioides HOM05D007395 ORTHO05D009347 3.8e-11 72.8 74 66.2
COL.COLO4_13341 Corchorus olitorius HOM05D007395 ORTHO05D009347 5.0e-11 72.4 45 77.8
Ca_08120_v3 Cicer arietinum L. HOM05D007395 ORTHO05D009347 6.5e-11 72.0 98 45.9
FAN02G3713 Fragaria x ananassa HOM05D007395 ORTHO05D009347 6.5e-11 72.0 184 34.2
FAN05G3246 Fragaria x ananassa HOM05D007395 ORTHO05D009347 6.5e-11 72.0 184 34.2
CDE06G0177 Ceratophyllum demersum HOM05D007395 ORTHO05D009347 1.1e-10 71.2 79 49.4
PGSC0003DMG400020197 Solanum tuberosum HOM05D007395 ORTHO05D009347 1.1e-10 71.2 74 58.1
Gohir.A07G230500 Gossypium hirsutum HOM05D007395 ORTHO05D009347 1.4e-10 70.9 82 63.4
Manes.11G078500 Manihot esculenta HOM05D007395 ORTHO05D009347 1.4e-10 70.9 87 50.6
Nn4g22190 Nelumbo nucifera HOM05D007395 ORTHO05D009347 1.4e-10 70.9 84 57.1
Atru.chr6.2633 Acer truncatum HOM05D007395 ORTHO05D009347 1.9e-10 70.5 85 52.9
AT1G12830 Arabidopsis thaliana HOM05D007395 ORTHO05D009347 1.9e-10 70.5 222 41.4
THA.LOC104805310 Tarenaya hassleriana HOM05D007395 ORTHO05D009347 1.9e-10 70.5 215 34.9
Nitab4.5_0000519g0230 Nicotiana tabacum HOM05D007395 ORTHO05D009347 2.5e-10 70.1 76 50.0
Gohir.D07G237800 Gossypium hirsutum HOM05D007395 ORTHO05D009347 3.2e-10 69.7 202 43.6
Gorai.001G273600 Gossypium raimondii HOM05D007395 ORTHO05D009347 3.2e-10 69.7 202 48.0
Lalb_Chr14g0363911 Lupinus albus HOM05D007395 ORTHO05D009347 3.2e-10 69.7 84 51.2
Aa31LG1G1930 Aethionema arabicum HOM05D007395 ORTHO05D009347 7.2e-10 68.6 207 43.5
FAN05G4833 Fragaria x ananassa HOM05D007395 ORTHO05D009347 7.2e-10 68.6 188 32.4
AL1G24470 Arabidopsis lyrata HOM05D007395 ORTHO05D009347 9.4e-10 68.2 233 41.6
RcHm_v2.0_Chr2g0176321 Rosa chinensis HOM05D007395 ORTHO05D009347 2.1e-09 67.0 209 36.8
MSTRG.20550 Avicennia marina HOM05D007395 ORTHO05D009347 2.7e-09 66.6 90 56.7
A08p32600 Brassica napus HOM05D007395 ORTHO05D009347 2.7e-09 66.6 73 64.4
A09p63590 Brassica napus HOM05D007395 ORTHO05D009347 3.6e-09 66.2 77 61.0
BraA09t41709Z Brassica rapa HOM05D007395 ORTHO05D009347 3.6e-09 66.2 77 61.0
BolC8t50971H Brassica oleracea HOM05D007395 ORTHO05D009347 4.6e-09 65.9 222 37.8
Nitab4.5_0002172g0070 Nicotiana tabacum HOM05D007395 ORTHO05D009347 4.6e-09 65.9 84 57.1
Duzib187G0287 Durio zibethinus HOM05D007395 ORTHO05D009347 6.1e-09 65.5 201 43.8
BraA08t35184Z Brassica rapa HOM05D007395 ORTHO05D009347 7.9e-09 65.1 73 63.0
CARHR013150 Cardamine hirsuta HOM05D007395 ORTHO05D009347 1.0e-08 64.7 46 69.6
Potri.001G323000 Populus trichocarpa HOM05D007395 ORTHO05D009347 1.0e-08 64.7 82 58.5
CiPaw.04G002100 Carya illinoinensis HOM05D007395 ORTHO05D009347 1.4e-08 64.3 43 67.4
CAN.G473.152 Capsicum annuum HOM05D007395 ORTHO05D009347 1.8e-08 63.9 74 50.0
EL10Ac6g13382 Beta vulgaris HOM05D007395 ORTHO05D009347 3.0e-08 63.2 87 44.8
Potri.017G061400 Populus trichocarpa HOM05D007395 ORTHO05D009347 6.7e-08 62.0 84 58.3
PGR142G0951 Punica granatum HOM05D007395 ORTHO05D009347 6.7e-08 62.0 87 47.1
Sp1g11400 Schrenkiella parvula HOM05D007395 ORTHO05D009347 6.7e-08 62.0 34 85.3
Glyma.16G050400 Glycine max HOM05D007395 ORTHO05D009347 8.8e-08 61.6 76 57.9
Ciclev10016987m.g Citrus clementina HOM05D007395 ORTHO05D009347 1.1e-07 61.2 45 66.7
Sc03g0004880 Simmondsia chinensis HOM05D007395 ORTHO05D009347 1.1e-07 61.2 202 31.2
Duzib264G0040 Durio zibethinus HOM05D007395 ORTHO05D009347 1.5e-07 60.8 70 54.3
Migut.B01251 Erythranthe guttata HOM05D007395 ORTHO05D009347 1.5e-07 60.8 85 44.7
BcaC07g40271 Brassica carinata HOM05D007395 ORTHO05D009347 2.0e-07 60.5 219 37.9
C05p10450 Brassica napus HOM05D007395 ORTHO05D009347 2.0e-07 60.5 32 84.4
C08p33720 Brassica napus HOM05D007395 ORTHO05D009347 2.0e-07 60.5 219 37.9
AUR62037845 Chenopodium quinoa HOM05D007395 ORTHO05D009347 2.0e-07 60.5 86 48.8
ECA238G3604 Erigeron canadensis HOM05D007395 ORTHO05D009347 3.3e-07 59.7 74 55.4
Aqoxy5G03201 Aquilegia oxysepala HOM05D007395 ORTHO05D009347 4.4e-07 59.3 93 41.9
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.3e-06 57.8 34 79.4
AUR62041081 Chenopodium quinoa HOM05D007395 ORTHO05D009347 2.2e-06 57.0 41 63.4
Sabra16G0204900 Salix brachista HOM05D007395 ORTHO05D009347 2.2e-06 57.0 203 49.8
Sabra17G0054500 Salix brachista HOM05D007395 ORTHO05D009347 2.2e-06 57.0 82 56.1
Duzib147G0006 Durio zibethinus HOM05D007395 ORTHO05D009347 2.8e-06 56.6 198 46.5
Glyma.19G100500 Glycine max HOM05D007395 ORTHO05D009347 6.3e-06 55.5 89 51.7


User provided reference genes

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