Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 1.3e-160 569.7 287 100.0
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 6.9e-82 308.1 285 57.5
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 2.5e-79 299.7 252 63.5
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 4.2e-79 298.9 239 66.1
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.3e-77 293.9 289 55.4
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.3e-77 293.9 224 66.1
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 2.3e-77 293.1 268 58.2
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 2.3e-77 293.1 233 66.5
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 2.3e-77 293.1 289 55.4
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 3.9e-77 292.4 289 56.7
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 1.5e-76 290.4 322 52.8
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.9e-76 290.0 290 57.6
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 7.4e-76 288.1 241 62.7
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.3e-75 287.3 286 57.3
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 4.8e-75 285.4 289 55.7
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 4.8e-75 285.4 268 59.0
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 4.8e-75 285.4 266 57.1
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.4e-74 283.9 295 54.9
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 1.4e-74 283.9 290 49.3
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.8e-74 283.5 240 63.8
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 1.8e-74 283.5 332 50.6
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 2.4e-74 283.1 271 58.3
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 9.0e-74 281.2 293 53.9
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 9.0e-74 281.2 221 65.2
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 1.2e-73 280.8 258 58.5
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.0e-73 280.0 235 62.1
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 5.8e-73 278.5 294 54.4
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 5.8e-73 278.5 282 56.4
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 1.7e-72 276.9 290 55.5
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 6.5e-72 275.0 222 64.4
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 7.1e-71 271.6 241 58.5
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 9.3e-71 271.2 227 62.6
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.2e-70 270.8 240 61.7
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 1.2e-70 270.8 221 60.6
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.2e-70 270.8 289 53.6
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.6e-70 270.4 234 60.7
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.6e-70 270.4 234 60.7
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 2.1e-70 270.0 216 61.6
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.7e-70 269.6 221 61.5
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.7e-70 269.6 241 58.5
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 7.9e-70 268.1 241 57.7
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.0e-69 267.7 230 60.9
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 1.3e-69 267.3 356 47.2
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 1.8e-69 266.9 279 52.3
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.8e-69 266.9 268 55.6
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 2.3e-69 266.5 283 54.1
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 3.9e-69 265.8 296 52.4
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 6.7e-69 265.0 219 62.6
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 6.7e-69 265.0 291 50.5
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 6.7e-69 265.0 240 58.3
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 8.7e-69 264.6 176 72.7
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 1.5e-68 263.8 241 58.5
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.5e-68 263.1 241 56.4
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 4.3e-68 262.3 216 63.0
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 7.4e-68 261.5 216 62.5
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 2.8e-67 259.6 279 53.4
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 3.7e-67 259.2 264 54.2
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 6.3e-67 258.5 271 52.8
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 6.3e-67 258.5 242 58.3
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.1e-66 257.7 289 51.9
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 1.1e-66 257.7 277 52.7
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 1.1e-66 257.7 240 57.9
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 1.1e-66 257.7 274 51.8
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.4e-66 257.3 241 55.6
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 1.4e-66 257.3 265 55.5
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 1.8e-66 256.9 213 62.0
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 2.4e-66 256.5 236 57.2
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 5.3e-66 255.4 290 51.0
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 6.9e-66 255.0 279 50.9
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 1.2e-65 254.2 277 53.1
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.0e-65 253.4 261 53.6
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.3e-64 250.8 270 51.5
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.9e-64 249.6 261 52.5
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 3.8e-64 249.2 278 54.3
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 5.0e-64 248.8 197 64.0
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.4e-63 247.3 234 56.0
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.9e-63 246.9 272 52.9
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.5e-63 246.5 170 71.8
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 3.2e-63 246.1 252 54.0
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 3.2e-63 246.1 252 54.0
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.2e-63 246.1 257 53.3
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 3.2e-63 246.1 215 57.7
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 5.5e-63 245.4 257 52.5
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 5.5e-63 245.4 257 52.5
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 7.9e-62 241.5 217 58.5
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.1e-60 237.7 217 57.1
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 6.3e-59 231.9 422 38.9
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 1.4e-53 214.2 211 54.5
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 3.9e-53 212.6 311 41.5
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 2.2e-51 206.8 210 51.9
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 3.1e-50 203.0 236 47.5
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 9.1e-50 201.4 232 53.0
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 7.7e-49 198.4 214 46.7
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 1.8e-45 187.2 214 48.6
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 8.8e-45 184.9 163 52.8
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 1.3e-43 181.0 218 49.1
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.7e-43 180.6 175 54.3
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.2e-43 180.3 161 52.2
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 2.6e-41 173.3 289 41.9
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.7e-35 154.1 200 46.5
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 2.7e-33 146.7 182 46.2
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.2e-31 139.4 88 76.1
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 5.5e-31 139.0 175 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 4.4e-28 129.4 134 52.2
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 9.8e-28 128.3 160 44.4
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.7e-24 117.5 293 35.2
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 2.3e-24 117.1 124 51.6
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 1.3e-19 101.3 132 46.2
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 8.3e-19 98.6 188 37.8
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.9e-15 87.4 157 37.6
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 2.1e-14 84.0 188 32.4
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 1.3e-11 74.7 61 62.3
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 5.4e-10 69.3 121 39.7
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 1.6e-09 67.8 145 36.6
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.7e-09 67.0 77 53.2
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.7e-08 64.3 85 41.2
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 3.9e-08 63.2 99 37.4


User provided reference genes

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