Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.4e-56 221.5 114 100.0
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.7e-55 219.2 114 98.2
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.0e-45 185.7 111 82.0
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 5.0e-44 181.0 112 79.5
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 6.6e-44 180.6 114 78.9
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 1.5e-43 179.5 112 77.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.9e-43 179.1 112 78.6
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 2.5e-43 178.7 112 77.7
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 3.3e-43 178.3 112 78.6
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 4.3e-43 177.9 114 78.1
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 5.6e-43 177.6 114 77.2
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 7.3e-43 177.2 112 76.8
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.2e-42 176.4 114 76.3
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.2e-42 176.4 114 76.3
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.6e-42 176.0 112 77.7
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.1e-42 175.6 112 76.8
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.1e-42 175.6 110 77.3
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 2.8e-42 175.3 112 76.8
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.6e-42 174.9 114 75.4
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 3.6e-42 174.9 112 77.7
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 4.7e-42 174.5 114 76.3
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 8.1e-42 173.7 111 77.5
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 8.1e-42 173.7 114 75.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.4e-41 172.9 114 71.9
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.4e-41 172.9 110 74.5
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.8e-41 172.6 112 77.7
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.1e-41 171.8 112 75.0
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 3.1e-41 171.8 110 73.6
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 4.0e-41 171.4 110 76.4
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 4.0e-41 171.4 112 76.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 5.2e-41 171.0 112 74.1
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.2e-41 171.0 112 74.1
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 6.8e-41 170.6 114 69.3
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 6.8e-41 170.6 112 74.1
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 6.8e-41 170.6 111 75.7
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 8.9e-41 170.2 114 75.4
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 8.9e-41 170.2 114 75.4
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.2e-40 169.9 112 75.9
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 1.2e-40 169.9 112 73.2
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.2e-40 169.9 112 74.1
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.2e-40 169.9 111 72.1
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.5e-40 169.5 110 78.2
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.0e-40 169.1 110 76.4
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.0e-40 169.1 112 74.1
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.0e-40 169.1 110 75.5
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 2.0e-40 169.1 110 71.8
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.6e-40 168.7 112 72.3
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.6e-40 168.7 110 74.5
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 2.6e-40 168.7 110 75.5
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 3.4e-40 168.3 112 72.3
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 3.4e-40 168.3 112 72.3
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 3.4e-40 168.3 114 71.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 4.4e-40 167.9 114 71.1
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 4.4e-40 167.9 112 74.1
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 4.4e-40 167.9 114 71.9
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 5.8e-40 167.5 112 72.3
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.8e-40 167.5 110 75.5
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 69.6
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 7.5e-40 167.2 114 74.6
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 7.5e-40 167.2 114 69.3
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 7.5e-40 167.2 113 71.7
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 70.5
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 70.5
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 72.3
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.5e-40 167.2 110 76.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 70.5
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 7.5e-40 167.2 112 72.3
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 9.8e-40 166.8 111 69.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 9.8e-40 166.8 112 71.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 9.8e-40 166.8 111 71.2
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.3e-39 166.4 111 69.4
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.3e-39 166.4 114 69.3
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-39 166.4 112 70.5
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.3e-39 166.4 112 70.5
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.7e-39 166.0 112 69.6
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.2e-39 165.6 114 72.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.2e-39 165.6 111 73.9
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.2e-39 165.6 112 71.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 2.9e-39 165.2 120 70.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.9e-39 165.2 110 73.6
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.9e-39 165.2 113 71.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 4.9e-39 164.5 112 73.2
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 6.4e-39 164.1 110 73.6
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 6.4e-39 164.1 110 72.7
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 6.4e-39 164.1 114 68.4
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 8.3e-39 163.7 112 71.4
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.1e-38 163.3 114 71.1
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.4e-38 162.9 111 72.1
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 3.2e-38 161.8 111 68.5
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 3.2e-38 161.8 110 70.9
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.2e-38 161.8 110 66.4
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 5.4e-38 161.0 110 70.9
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 5.4e-38 161.0 110 70.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 9.2e-38 160.2 112 65.2
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 2.1e-37 159.1 114 68.4
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.7e-36 156.0 102 72.5
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 3.0e-36 155.2 112 72.3
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 6.6e-36 154.1 112 72.3
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.5e-35 152.1 112 67.9
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.3e-35 151.8 114 65.8
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.4e-33 146.4 113 66.4
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 5.8e-32 141.0 152 50.0
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.3e-31 139.8 177 46.3
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 4.9e-31 137.9 170 47.1
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.9e-30 136.0 86 79.1
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 4.1e-30 134.8 86 77.9
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 6.0e-29 131.0 92 69.6
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.5e-27 126.3 107 57.0
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.1e-25 118.6 110 52.7
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 4.0e-25 118.2 109 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 2.0e-24 115.9 110 52.7
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 2.6e-24 115.5 86 64.0
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.6e-21 106.3 96 58.3
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 9.6e-19 97.1 64 73.4
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.4e-17 93.2 57 80.7
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 3.4e-16 88.6 113 38.9
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 2.9e-15 85.5 112 40.2
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 3.8e-15 85.1 157 33.8
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 4.9e-15 84.7 94 50.0
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.6e-13 79.7 59 69.5
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.8e-12 76.3 110 40.9


User provided reference genes

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