Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 2.8e-208 728.4 377 100.0
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 3.2e-119 432.6 388 62.6
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.3e-117 426.4 386 60.9
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 3.0e-117 426.0 386 61.7
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.5e-116 423.7 383 61.4
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 7.3e-116 421.4 390 61.5
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 9.6e-116 421.0 387 61.2
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 3.1e-114 416.0 373 61.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.6e-113 412.9 373 60.1
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.4e-113 412.1 401 58.9
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 4.4e-113 412.1 405 59.0
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.3e-112 410.6 378 59.5
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.7e-112 410.2 387 61.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 1.7e-112 410.2 378 62.2
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 8.4e-112 407.9 384 59.1
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.1e-111 407.5 386 59.1
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.4e-111 407.1 381 59.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.6e-110 403.7 381 58.0
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 7.9e-110 401.4 390 58.2
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 6.6e-109 398.3 373 60.6
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.6e-109 398.3 385 58.4
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 6.6e-109 398.3 385 58.7
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 8.7e-109 397.9 382 58.9
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 8.7e-109 397.9 388 58.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 8.7e-109 397.9 382 57.6
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.5e-108 396.4 392 57.9
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 4.3e-108 395.6 392 57.4
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 4.3e-108 395.6 382 57.3
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 7.4e-108 394.8 392 57.4
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 3.6e-107 392.5 383 56.9
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 8.1e-107 391.3 379 58.6
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 4.0e-106 389.0 389 57.3
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 9.0e-106 387.9 356 60.1
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.0e-105 386.7 403 56.6
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.7e-104 383.6 358 60.3
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 3.8e-104 382.5 378 57.7
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 8.4e-104 381.3 448 52.0
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-103 380.9 380 58.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.1e-103 380.9 380 58.2
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.1e-103 380.9 391 57.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.9e-103 380.2 369 59.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.2e-103 379.4 398 56.5
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 4.2e-103 379.0 374 55.6
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 7.1e-103 378.3 372 59.4
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 7.1e-103 378.3 412 54.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.1e-102 376.7 402 56.0
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 2.1e-102 376.7 440 52.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 3.5e-102 375.9 368 57.6
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.0e-101 374.4 381 55.6
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 3.3e-100 369.4 386 55.7
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 3.3e-100 369.4 374 54.8
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 3.3e-100 369.4 381 55.1
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.6e-100 368.6 379 56.2
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.4e-100 368.2 375 57.9
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 9.6e-100 367.9 391 57.3
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-99 367.5 379 55.7
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.6e-99 367.1 377 56.2
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.6e-99 367.1 372 55.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.8e-99 366.3 372 54.6
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 4.8e-99 365.5 376 55.6
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 6.2e-99 365.2 374 57.2
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 8.1e-99 364.8 374 56.7
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 8.1e-99 364.8 396 54.5
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.8e-98 363.6 376 57.7
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 6.9e-98 361.7 371 55.0
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.5e-97 360.5 379 56.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 2.6e-97 359.8 388 55.2
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 3.4e-97 359.4 374 54.0
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 3.4e-97 359.4 466 49.6
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 3.4e-97 359.4 367 55.9
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 4.5e-97 359.0 354 55.9
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 7.6e-97 358.2 377 54.6
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.3e-96 357.5 353 58.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 3.8e-96 355.9 383 55.6
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 8.4e-96 354.8 383 53.5
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.9e-95 353.6 370 55.4
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 4.2e-95 352.4 378 52.4
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 4.2e-95 352.4 376 53.7
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 9.3e-95 351.3 377 54.4
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.0e-93 347.8 373 54.4
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.3e-93 347.4 380 53.4
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.9e-93 345.9 444 47.7
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 3.9e-93 345.9 394 52.3
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 6.7e-93 345.1 403 50.6
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 8.7e-93 344.7 393 53.2
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.6e-91 340.5 375 49.1
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 3.7e-91 339.3 399 51.9
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 3.7e-91 339.3 378 49.5
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.6e-89 333.2 619 38.6
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 3.4e-89 332.8 353 55.0
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.0e-88 331.3 393 49.6
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 2.2e-88 330.1 366 50.8
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.1e-87 327.8 398 49.0
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.4e-87 327.4 419 47.7
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 1.4e-87 327.4 367 50.7
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.6e-86 323.9 323 54.8
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 4.6e-86 322.4 364 52.7
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 7.9e-86 321.6 382 51.8
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 4.8e-83 312.4 382 51.3
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 3.1e-82 309.7 451 44.6
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 5.5e-79 298.9 336 53.3
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 3.0e-77 293.1 384 47.7
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 3.7e-75 286.2 389 45.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.2e-70 271.2 374 45.5
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.6e-65 253.4 164 75.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 7.2e-55 218.8 114 98.2
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 7.2e-55 218.8 135 78.5
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.6e-54 217.6 141 76.6
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.5e-47 194.5 374 35.8
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 2.6e-44 183.7 369 34.1
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 7.5e-44 182.2 387 34.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.7e-43 181.0 266 43.2
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 4.9e-43 179.5 283 45.6
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 1.5e-39 167.9 368 33.2
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 8.9e-29 132.1 228 32.9
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 7.0e-26 122.5 178 39.9
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 3.5e-25 120.2 220 39.5
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.0e-24 116.3 96 63.5
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 8.1e-22 109.0 220 31.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 4.0e-21 106.7 67 76.1
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.4e-19 99.4 64 75.0
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 4.6e-17 93.2 57 80.7
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 6.0e-17 92.8 57 77.2
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.0e-16 92.0 175 33.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.1e-13 82.0 59 71.2


User provided reference genes

Program Settings